miRNA display CGI


Results 41 - 47 of 47 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11360 5' -59.4 NC_003084.1 + 96446 0.66 0.613944
Target:  5'- cGCCACCACCaUCGGUaCCAUUugCGa -3'
miRNA:   3'- uUGGUGGUGGaGGUCGaGGUGGugGU- -5'
11360 5' -59.4 NC_003084.1 + 96725 0.66 0.645149
Target:  5'- ---gACCACCcUCGGUUCCacaACCACCAc -3'
miRNA:   3'- uuggUGGUGGaGGUCGAGG---UGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 97215 0.73 0.284109
Target:  5'- cGGCCAUCACCaaaucggCCAGCUCgGCCaACCu -3'
miRNA:   3'- -UUGGUGGUGGa------GGUCGAGgUGG-UGGu -5'
11360 5' -59.4 NC_003084.1 + 100978 0.73 0.277405
Target:  5'- cACCACCACCgCCg---CCACCACCAc -3'
miRNA:   3'- uUGGUGGUGGaGGucgaGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 104682 0.67 0.548048
Target:  5'- cACCAgCGCCgagUUCAGCUCCucggauacacgcuCCACCAu -3'
miRNA:   3'- uUGGUgGUGG---AGGUCGAGGu------------GGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 104769 0.74 0.245771
Target:  5'- cACCACCAcauCCUCCGG-UCCACCAauCCAu -3'
miRNA:   3'- uUGGUGGU---GGAGGUCgAGGUGGU--GGU- -5'
11360 5' -59.4 NC_003084.1 + 105362 0.69 0.482601
Target:  5'- cGACCugCG-CUCCAGCUCaCGCUcgGCCu -3'
miRNA:   3'- -UUGGugGUgGAGGUCGAG-GUGG--UGGu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.