Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 96446 | 0.66 | 0.613944 |
Target: 5'- cGCCACCACCaUCGGUaCCAUUugCGa -3' miRNA: 3'- uUGGUGGUGGaGGUCGaGGUGGugGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 96725 | 0.66 | 0.645149 |
Target: 5'- ---gACCACCcUCGGUUCCacaACCACCAc -3' miRNA: 3'- uuggUGGUGGaGGUCGAGG---UGGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 97215 | 0.73 | 0.284109 |
Target: 5'- cGGCCAUCACCaaaucggCCAGCUCgGCCaACCu -3' miRNA: 3'- -UUGGUGGUGGa------GGUCGAGgUGG-UGGu -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 100978 | 0.73 | 0.277405 |
Target: 5'- cACCACCACCgCCg---CCACCACCAc -3' miRNA: 3'- uUGGUGGUGGaGGucgaGGUGGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 104682 | 0.67 | 0.548048 |
Target: 5'- cACCAgCGCCgagUUCAGCUCCucggauacacgcuCCACCAu -3' miRNA: 3'- uUGGUgGUGG---AGGUCGAGGu------------GGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 104769 | 0.74 | 0.245771 |
Target: 5'- cACCACCAcauCCUCCGG-UCCACCAauCCAu -3' miRNA: 3'- uUGGUGGU---GGAGGUCgAGGUGGU--GGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 105362 | 0.69 | 0.482601 |
Target: 5'- cGACCugCG-CUCCAGCUCaCGCUcgGCCu -3' miRNA: 3'- -UUGGugGUgGAGGUCGAG-GUGG--UGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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