miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11361 3' -55.5 NC_003084.1 + 46681 0.67 0.834857
Target:  5'- aCCUgGACAACCUGAagcuGCUGCuGGagucgcgcaaauaUGUGg -3'
miRNA:   3'- gGGAgUUGUUGGACU----CGGCG-CC-------------ACAC- -5'
11361 3' -55.5 NC_003084.1 + 1456 0.67 0.821955
Target:  5'- aCCCUCGgguucaacaucuuccACGACCUGAGguaGCGGUu-- -3'
miRNA:   3'- -GGGAGU---------------UGUUGGACUCgg-CGCCAcac -5'
11361 3' -55.5 NC_003084.1 + 91363 0.67 0.799565
Target:  5'- aCCUCGccuuugguguuguACAACC-GGGCCGUGGU-UGg -3'
miRNA:   3'- gGGAGU-------------UGUUGGaCUCGGCGCCAcAC- -5'
11361 3' -55.5 NC_003084.1 + 21117 0.68 0.791255
Target:  5'- aCUUUAGCGAauuuagGAGCCcguGCGGUGUGg -3'
miRNA:   3'- gGGAGUUGUUgga---CUCGG---CGCCACAC- -5'
11361 3' -55.5 NC_003084.1 + 38625 0.7 0.68201
Target:  5'- aCUCUCGGCAGCCccgGuucCCGCgGGUGUGc -3'
miRNA:   3'- -GGGAGUUGUUGGa--Cuc-GGCG-CCACAC- -5'
11361 3' -55.5 NC_003084.1 + 102080 0.71 0.619388
Target:  5'- --aUCAACGugACCggcgcGAGCCGCGGUGaUGg -3'
miRNA:   3'- gggAGUUGU--UGGa----CUCGGCGCCAC-AC- -5'
11361 3' -55.5 NC_003084.1 + 10066 0.72 0.515562
Target:  5'- aUCCUCAACcuCCauaucggguUGAGCCgagguugGCGGUGUGg -3'
miRNA:   3'- -GGGAGUUGuuGG---------ACUCGG-------CGCCACAC- -5'
11361 3' -55.5 NC_003084.1 + 16610 0.73 0.496734
Target:  5'- gCgUCGGCuuCCUGAGCCGUGG-GUa -3'
miRNA:   3'- gGgAGUUGuuGGACUCGGCGCCaCAc -5'
11361 3' -55.5 NC_003084.1 + 53021 0.73 0.486949
Target:  5'- aUCgcgCAGCAccACCUGGGCuCGCGGUcGUGg -3'
miRNA:   3'- gGGa--GUUGU--UGGACUCG-GCGCCA-CAC- -5'
11361 3' -55.5 NC_003084.1 + 10331 1.11 0.001698
Target:  5'- gCCCUCAACAACCUGAGCCGCGGUGUGg -3'
miRNA:   3'- -GGGAGUUGUUGGACUCGGCGCCACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.