miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11362 3' -46 NC_003084.1 + 36094 0.66 0.999527
Target:  5'- -cCGAAAagcUGUACAUGUUUGCggugaaguucaGCUACu -3'
miRNA:   3'- uuGCUUU---ACAUGUACAAACGg----------UGGUG- -5'
11362 3' -46 NC_003084.1 + 63356 0.66 0.999527
Target:  5'- cGCGucgcauGGUGUGCggGUguauacUGCCACCAa -3'
miRNA:   3'- uUGCu-----UUACAUGuaCAa-----ACGGUGGUg -5'
11362 3' -46 NC_003084.1 + 57938 0.66 0.999402
Target:  5'- gAACGAGAUGc-CAauUUUGCCACCu- -3'
miRNA:   3'- -UUGCUUUACauGUacAAACGGUGGug -5'
11362 3' -46 NC_003084.1 + 98387 0.67 0.999001
Target:  5'- gAACGAGGUGUuuacgaauacgaugGCAacGUUuggUGCCACCAa -3'
miRNA:   3'- -UUGCUUUACA--------------UGUa-CAA---ACGGUGGUg -5'
11362 3' -46 NC_003084.1 + 35238 0.67 0.998934
Target:  5'- cGCGAGGUGguagcaccacuugaGCAUGUgcggUGUCACCGg -3'
miRNA:   3'- uUGCUUUACa-------------UGUACAa---ACGGUGGUg -5'
11362 3' -46 NC_003084.1 + 99800 0.68 0.995642
Target:  5'- cGCGGuuauaauaaaAGUGUAgaacgaaGUGUUUGCCGCCAa -3'
miRNA:   3'- uUGCU----------UUACAUg------UACAAACGGUGGUg -5'
11362 3' -46 NC_003084.1 + 64337 0.69 0.992924
Target:  5'- cACGAAgccGUGUACg-----GCCACCACg -3'
miRNA:   3'- uUGCUU---UACAUGuacaaaCGGUGGUG- -5'
11362 3' -46 NC_003084.1 + 48731 0.69 0.992924
Target:  5'- cGGCGAAGUGUACAaGUUcgagGCCGacuuCCAUc -3'
miRNA:   3'- -UUGCUUUACAUGUaCAAa---CGGU----GGUG- -5'
11362 3' -46 NC_003084.1 + 48061 0.7 0.987364
Target:  5'- -gUGggGUGUGCGUcgaggaGUggUGCUACCACc -3'
miRNA:   3'- uuGCuuUACAUGUA------CAa-ACGGUGGUG- -5'
11362 3' -46 NC_003084.1 + 30139 0.7 0.987364
Target:  5'- uGGCGGGAUGgcCGUGUUuaaaaUGaCCACCAa -3'
miRNA:   3'- -UUGCUUUACauGUACAA-----AC-GGUGGUg -5'
11362 3' -46 NC_003084.1 + 48899 0.71 0.977357
Target:  5'- gGugGAGAUGUAUAccauaacguuaacacUGgcggaUGCCACCACc -3'
miRNA:   3'- -UugCUUUACAUGU---------------ACaa---ACGGUGGUG- -5'
11362 3' -46 NC_003084.1 + 98227 0.71 0.970257
Target:  5'- cGCGGGAUGUugGUGgcaccaaacgUUGCCAUCGu -3'
miRNA:   3'- uUGCUUUACAugUACa---------AACGGUGGUg -5'
11362 3' -46 NC_003084.1 + 60595 0.71 0.970257
Target:  5'- gGAUGAAagGUGCGaauaaUGUUUGCCAgcuCCACc -3'
miRNA:   3'- -UUGCUUuaCAUGU-----ACAAACGGU---GGUG- -5'
11362 3' -46 NC_003084.1 + 12247 1.1 0.015005
Target:  5'- cAACGAAAUGUACAUGUUUGCCACCACg -3'
miRNA:   3'- -UUGCUUUACAUGUACAAACGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.