miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11365 3' -52.7 NC_003084.1 + 34231 0.66 0.964053
Target:  5'- --aGGUCcacucgGCGaaGCGGCCGUGauaaUGCGUCg -3'
miRNA:   3'- guaCCAG------UGC--UGCUGGUACa---ACGCGG- -5'
11365 3' -52.7 NC_003084.1 + 30535 0.66 0.964053
Target:  5'- -cUGGUacguucaAUGugGACCGaGggGCGCUg -3'
miRNA:   3'- guACCAg------UGCugCUGGUaCaaCGCGG- -5'
11365 3' -52.7 NC_003084.1 + 40167 0.66 0.960479
Target:  5'- -cUGGUCACaauGGUGGCCGUGcucaucaUGCGCUa -3'
miRNA:   3'- guACCAGUG---CUGCUGGUACa------ACGCGG- -5'
11365 3' -52.7 NC_003084.1 + 101107 0.66 0.943754
Target:  5'- gGUGGUgGCGGCGGugGUGgugacUGCaGCCu -3'
miRNA:   3'- gUACCAgUGCUGCUggUACa----ACG-CGG- -5'
11365 3' -52.7 NC_003084.1 + 94505 0.67 0.938946
Target:  5'- aCGUGG-CGC-ACGuCCgGUGUUGcCGCCg -3'
miRNA:   3'- -GUACCaGUGcUGCuGG-UACAAC-GCGG- -5'
11365 3' -52.7 NC_003084.1 + 72125 0.67 0.932311
Target:  5'- --gGGUCGCGAaaacgcugcagaacCGACguUGgugaGCGCCg -3'
miRNA:   3'- guaCCAGUGCU--------------GCUGguACaa--CGCGG- -5'
11365 3' -52.7 NC_003084.1 + 70266 0.67 0.928559
Target:  5'- aUAUGGaUCAC-ACGACCAcUGUUGaGCUc -3'
miRNA:   3'- -GUACC-AGUGcUGCUGGU-ACAACgCGG- -5'
11365 3' -52.7 NC_003084.1 + 12331 0.67 0.91714
Target:  5'- -uUGGUCGCccaccuCGGCCAUGagGUGCa -3'
miRNA:   3'- guACCAGUGcu----GCUGGUACaaCGCGg -5'
11365 3' -52.7 NC_003084.1 + 88545 0.68 0.911044
Target:  5'- uGUGGUCcgguGCGAgGACCGg--UGUGCa -3'
miRNA:   3'- gUACCAG----UGCUgCUGGUacaACGCGg -5'
11365 3' -52.7 NC_003084.1 + 72993 0.68 0.891235
Target:  5'- -uUGGaccgCACGuACGACCGguUGUUG-GCCa -3'
miRNA:   3'- guACCa---GUGC-UGCUGGU--ACAACgCGG- -5'
11365 3' -52.7 NC_003084.1 + 30937 0.68 0.884135
Target:  5'- --cGGUCACGAa---CGUGUgacccGCGCCg -3'
miRNA:   3'- guaCCAGUGCUgcugGUACAa----CGCGG- -5'
11365 3' -52.7 NC_003084.1 + 24072 0.69 0.852566
Target:  5'- aCGUGGaggucccUCACGAgGAuccCCGUGUcgcucaaaagUGCGCCc -3'
miRNA:   3'- -GUACC-------AGUGCUgCU---GGUACA----------ACGCGG- -5'
11365 3' -52.7 NC_003084.1 + 15869 0.7 0.836679
Target:  5'- aCAUGGUCGuCG-UGACCAUGgguaGCCc -3'
miRNA:   3'- -GUACCAGU-GCuGCUGGUACaacgCGG- -5'
11365 3' -52.7 NC_003084.1 + 6975 0.71 0.742574
Target:  5'- --aGGUguUGGCGGCCggGUUGUGCg -3'
miRNA:   3'- guaCCAguGCUGCUGGuaCAACGCGg -5'
11365 3' -52.7 NC_003084.1 + 53291 0.71 0.742574
Target:  5'- ---uGUC-CGGCGGCCGaGUUGCGCUc -3'
miRNA:   3'- guacCAGuGCUGCUGGUaCAACGCGG- -5'
11365 3' -52.7 NC_003084.1 + 15742 1.13 0.002409
Target:  5'- cCAUGGUCACGACGACCAUGUUGCGCCa -3'
miRNA:   3'- -GUACCAGUGCUGCUGGUACAACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.