miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11367 3' -54.8 NC_003084.1 + 104937 0.66 0.874209
Target:  5'- -aGCGU---GAUGuGCGgUUGGAUCGCg -3'
miRNA:   3'- gaCGCGuguCUGC-CGUgAACCUAGCG- -5'
11367 3' -54.8 NC_003084.1 + 60639 0.66 0.874209
Target:  5'- gCUGUGUA-GGGCGGCACagcGGGUCa- -3'
miRNA:   3'- -GACGCGUgUCUGCCGUGaa-CCUAGcg -5'
11367 3' -54.8 NC_003084.1 + 43945 0.66 0.866607
Target:  5'- gCUGCGUACGGuaccuuuCGGCGCUgucGGAa--- -3'
miRNA:   3'- -GACGCGUGUCu------GCCGUGAa--CCUagcg -5'
11367 3' -54.8 NC_003084.1 + 92471 0.67 0.858782
Target:  5'- gUGUacgaGCACAagucGGCGGCGCUguUGGGUUGa -3'
miRNA:   3'- gACG----CGUGU----CUGCCGUGA--ACCUAGCg -5'
11367 3' -54.8 NC_003084.1 + 99423 0.67 0.850738
Target:  5'- gUGCGCGCAGACgaGGC-CgcaauUCGCg -3'
miRNA:   3'- gACGCGUGUCUG--CCGuGaaccuAGCG- -5'
11367 3' -54.8 NC_003084.1 + 98713 0.67 0.850738
Target:  5'- uUGCGUugGGccAUGGcCGCuUUGGAucUCGCa -3'
miRNA:   3'- gACGCGugUC--UGCC-GUG-AACCU--AGCG- -5'
11367 3' -54.8 NC_003084.1 + 13588 0.67 0.842483
Target:  5'- ---aGCGCAGcuuguGCGGcCAUUUGGAUUGUa -3'
miRNA:   3'- gacgCGUGUC-----UGCC-GUGAACCUAGCG- -5'
11367 3' -54.8 NC_003084.1 + 96603 0.68 0.798322
Target:  5'- gCUGCGCGacCGGuuGGgACg-GGGUCGCa -3'
miRNA:   3'- -GACGCGU--GUCugCCgUGaaCCUAGCG- -5'
11367 3' -54.8 NC_003084.1 + 5294 0.73 0.501609
Target:  5'- gUGUauGUACAGACGGCACggccccGGUCGCc -3'
miRNA:   3'- gACG--CGUGUCUGCCGUGaac---CUAGCG- -5'
11367 3' -54.8 NC_003084.1 + 63745 0.74 0.462498
Target:  5'- gUGgGCACAGAUGGagucaACUUGGAUucauuggcCGCa -3'
miRNA:   3'- gACgCGUGUCUGCCg----UGAACCUA--------GCG- -5'
11367 3' -54.8 NC_003084.1 + 31911 1.08 0.002889
Target:  5'- cCUGCGCACAGACGGCACUUGGAUCGUu -3'
miRNA:   3'- -GACGCGUGUCUGCCGUGAACCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.