miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11367 5' -54.1 NC_003084.1 + 69480 0.66 0.920917
Target:  5'- gGGCguGCUACGAcCGCAGCUcaucUGGGACa -3'
miRNA:   3'- gCCG--CGAUGUU-GCGUCGGcu--GCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 71289 0.7 0.733513
Target:  5'- uGGUaCUGCGugGCggaccugaagcuggcGGUCGACGGAACa -3'
miRNA:   3'- gCCGcGAUGUugCG---------------UCGGCUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 71619 0.66 0.902414
Target:  5'- gGGuUGCUACAACGaAGUCGuACGguACg -3'
miRNA:   3'- gCC-GCGAUGUUGCgUCGGC-UGCuuUG- -5'
11367 5' -54.1 NC_003084.1 + 71658 0.66 0.915004
Target:  5'- uCGGCGCUGCcuGAUGCcGUuuCGGCaGAACg -3'
miRNA:   3'- -GCCGCGAUG--UUGCGuCG--GCUGcUUUG- -5'
11367 5' -54.1 NC_003084.1 + 75250 0.69 0.798027
Target:  5'- aGGCGgaGCGugcGCGCggcacggucauAGCCGGCGcAACg -3'
miRNA:   3'- gCCGCgaUGU---UGCG-----------UCGGCUGCuUUG- -5'
11367 5' -54.1 NC_003084.1 + 80910 0.66 0.908836
Target:  5'- uGaGCGC-ACGGuucUGCAGCCGGCGu-ACa -3'
miRNA:   3'- gC-CGCGaUGUU---GCGUCGGCUGCuuUG- -5'
11367 5' -54.1 NC_003084.1 + 81824 0.66 0.920917
Target:  5'- uCGGCGCUGCAcauUGCccagaaAGgCGAgUGAAGCg -3'
miRNA:   3'- -GCCGCGAUGUu--GCG------UCgGCU-GCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 89791 0.67 0.888822
Target:  5'- uGGUGCUucCAACGguGCCGG-GAcuGCa -3'
miRNA:   3'- gCCGCGAu-GUUGCguCGGCUgCUu-UG- -5'
11367 5' -54.1 NC_003084.1 + 94702 0.67 0.869708
Target:  5'- uGGCGCacauuggcgaaccuuUGCGGC-CGGCCGcCGAGAg -3'
miRNA:   3'- gCCGCG---------------AUGUUGcGUCGGCuGCUUUg -5'
11367 5' -54.1 NC_003084.1 + 97633 0.66 0.920917
Target:  5'- -cGCGgUGCGAUGUGGaCCGuaGCGAGGCu -3'
miRNA:   3'- gcCGCgAUGUUGCGUC-GGC--UGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 97803 0.66 0.908836
Target:  5'- uCGGC-CaACGGCucCAGCCGACGcAACa -3'
miRNA:   3'- -GCCGcGaUGUUGc-GUCGGCUGCuUUG- -5'
11367 5' -54.1 NC_003084.1 + 100785 0.74 0.520202
Target:  5'- uGaGCGCUAC--UGCAGCCGAUGGAu- -3'
miRNA:   3'- gC-CGCGAUGuuGCGUCGGCUGCUUug -5'
11367 5' -54.1 NC_003084.1 + 105497 0.66 0.908836
Target:  5'- aGGCcgagcgugaGCUGgAGCGCAgGUCGAUGGAGg -3'
miRNA:   3'- gCCG---------CGAUgUUGCGU-CGGCUGCUUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.