miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11367 5' -54.1 NC_003084.1 + 31946 1.11 0.002231
Target:  5'- cCGGCGCUACAACGCAGCCGACGAAACg -3'
miRNA:   3'- -GCCGCGAUGUUGCGUCGGCUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 97633 0.66 0.920917
Target:  5'- -cGCGgUGCGAUGUGGaCCGuaGCGAGGCu -3'
miRNA:   3'- gcCGCgAUGUUGCGUC-GGC--UGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 39930 0.66 0.920917
Target:  5'- gGGUGUggaaaauuuUAGCGCAaUCGGCGAAACa -3'
miRNA:   3'- gCCGCGau-------GUUGCGUcGGCUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 47186 0.66 0.914399
Target:  5'- cCGGC-------CGCAGCCGugGGAACu -3'
miRNA:   3'- -GCCGcgauguuGCGUCGGCugCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 10388 0.66 0.908836
Target:  5'- gGGUGCUugGA-GCAGCUGAauauGGCa -3'
miRNA:   3'- gCCGCGAugUUgCGUCGGCUgcu-UUG- -5'
11367 5' -54.1 NC_003084.1 + 9348 0.67 0.888822
Target:  5'- cCGGUGCgcccagcucgGCAGCGacaAGuuGAUGAAAUu -3'
miRNA:   3'- -GCCGCGa---------UGUUGCg--UCggCUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 89791 0.67 0.888822
Target:  5'- uGGUGCUucCAACGguGCCGG-GAcuGCa -3'
miRNA:   3'- gCCGCGAu-GUUGCguCGGCUgCUu-UG- -5'
11367 5' -54.1 NC_003084.1 + 29664 0.67 0.88166
Target:  5'- aCGaGCGCaGCccgaacCGCAGCCacugucGACGAAGCu -3'
miRNA:   3'- -GC-CGCGaUGuu----GCGUCGG------CUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 94702 0.67 0.869708
Target:  5'- uGGCGCacauuggcgaaccuuUGCGGC-CGGCCGcCGAGAg -3'
miRNA:   3'- gCCGCG---------------AUGUUGcGUCGGCuGCUUUg -5'
11367 5' -54.1 NC_003084.1 + 55406 0.68 0.825205
Target:  5'- uCGGCaGCaGCAGCaGCAGCCGGaucAACa -3'
miRNA:   3'- -GCCG-CGaUGUUG-CGUCGGCUgcuUUG- -5'
11367 5' -54.1 NC_003084.1 + 64421 0.75 0.470486
Target:  5'- gCGGUGCUcaaGCAcgucuaaGCAGuCCGGCGAAGCg -3'
miRNA:   3'- -GCCGCGA---UGUug-----CGUC-GGCUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 100785 0.74 0.520202
Target:  5'- uGaGCGCUAC--UGCAGCCGAUGGAu- -3'
miRNA:   3'- gC-CGCGAUGuuGCGUCGGCUGCUUug -5'
11367 5' -54.1 NC_003084.1 + 45873 0.73 0.561399
Target:  5'- cCGGgGCUGCAGuugGCuAGuuGACGGAACa -3'
miRNA:   3'- -GCCgCGAUGUUg--CG-UCggCUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 14856 0.7 0.7192
Target:  5'- uGGuCGgUACaAGCGguGCCG-CGAGGCg -3'
miRNA:   3'- gCC-GCgAUG-UUGCguCGGCuGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 63143 0.69 0.788632
Target:  5'- uGGUGCUcACggUGguGCCGACacGGCu -3'
miRNA:   3'- gCCGCGA-UGuuGCguCGGCUGcuUUG- -5'
11367 5' -54.1 NC_003084.1 + 75250 0.69 0.798027
Target:  5'- aGGCGgaGCGugcGCGCggcacggucauAGCCGGCGcAACg -3'
miRNA:   3'- gCCGCgaUGU---UGCG-----------UCGGCUGCuUUG- -5'
11367 5' -54.1 NC_003084.1 + 31613 0.68 0.825205
Target:  5'- uGGaGCUGCAGUGCAGCU-ACGGAAUg -3'
miRNA:   3'- gCCgCGAUGUUGCGUCGGcUGCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 69480 0.66 0.920917
Target:  5'- gGGCguGCUACGAcCGCAGCUcaucUGGGACa -3'
miRNA:   3'- gCCG--CGAUGUU-GCGUCGGcu--GCUUUG- -5'
11367 5' -54.1 NC_003084.1 + 23032 0.71 0.688036
Target:  5'- uGGUGCUguACAuuuACaCGGCCGACGAGuACg -3'
miRNA:   3'- gCCGCGA--UGU---UGcGUCGGCUGCUU-UG- -5'
11367 5' -54.1 NC_003084.1 + 71289 0.7 0.733513
Target:  5'- uGGUaCUGCGugGCggaccugaagcuggcGGUCGACGGAACa -3'
miRNA:   3'- gCCGcGAUGUugCG---------------UCGGCUGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.