Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 55406 | 0.68 | 0.825205 |
Target: 5'- uCGGCaGCaGCAGCaGCAGCCGGaucAACa -3' miRNA: 3'- -GCCG-CGaUGUUG-CGUCGGCUgcuUUG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 31613 | 0.68 | 0.825205 |
Target: 5'- uGGaGCUGCAGUGCAGCU-ACGGAAUg -3' miRNA: 3'- gCCgCGAUGUUGCGUCGGcUGCUUUG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 23089 | 0.68 | 0.816322 |
Target: 5'- uGGCGCUcaACAACaauCAGCUGGCGcacACg -3' miRNA: 3'- gCCGCGA--UGUUGc--GUCGGCUGCuu-UG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 75250 | 0.69 | 0.798027 |
Target: 5'- aGGCGgaGCGugcGCGCggcacggucauAGCCGGCGcAACg -3' miRNA: 3'- gCCGCgaUGU---UGCG-----------UCGGCUGCuUUG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 63143 | 0.69 | 0.788632 |
Target: 5'- uGGUGCUcACggUGguGCCGACacGGCu -3' miRNA: 3'- gCCGCGA-UGuuGCguCGGCUGcuUUG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 71289 | 0.7 | 0.733513 |
Target: 5'- uGGUaCUGCGugGCggaccugaagcuggcGGUCGACGGAACa -3' miRNA: 3'- gCCGcGAUGUugCG---------------UCGGCUGCUUUG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 14856 | 0.7 | 0.7192 |
Target: 5'- uGGuCGgUACaAGCGguGCCG-CGAGGCg -3' miRNA: 3'- gCC-GCgAUG-UUGCguCGGCuGCUUUG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 23032 | 0.71 | 0.688036 |
Target: 5'- uGGUGCUguACAuuuACaCGGCCGACGAGuACg -3' miRNA: 3'- gCCGCGA--UGU---UGcGUCGGCUGCUU-UG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 11641 | 0.71 | 0.666994 |
Target: 5'- aCGGCGCUcaACGAUGUuuaUGGCGGAGCg -3' miRNA: 3'- -GCCGCGA--UGUUGCGucgGCUGCUUUG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 45873 | 0.73 | 0.561399 |
Target: 5'- cCGGgGCUGCAGuugGCuAGuuGACGGAACa -3' miRNA: 3'- -GCCgCGAUGUUg--CG-UCggCUGCUUUG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 100785 | 0.74 | 0.520202 |
Target: 5'- uGaGCGCUAC--UGCAGCCGAUGGAu- -3' miRNA: 3'- gC-CGCGAUGuuGCGUCGGCUGCUUug -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 64421 | 0.75 | 0.470486 |
Target: 5'- gCGGUGCUcaaGCAcgucuaaGCAGuCCGGCGAAGCg -3' miRNA: 3'- -GCCGCGA---UGUug-----CGUC-GGCUGCUUUG- -5' |
|||||||
11367 | 5' | -54.1 | NC_003084.1 | + | 31946 | 1.11 | 0.002231 |
Target: 5'- cCGGCGCUACAACGCAGCCGACGAAACg -3' miRNA: 3'- -GCCGCGAUGUUGCGUCGGCUGCUUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home