Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11368 | 3' | -56.9 | NC_003084.1 | + | 37812 | 1.06 | 0.002191 |
Target: 5'- aAUGUGGGCCCCACAAAAGUGGACCCGu -3' miRNA: 3'- -UACACCCGGGGUGUUUUCACCUGGGC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 37877 | 0.9 | 0.029918 |
Target: 5'- uUG-GcGGCCCCACAAAAGUGGACCCGu -3' miRNA: 3'- uACaC-CCGGGGUGUUUUCACCUGGGC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 68444 | 0.89 | 0.033478 |
Target: 5'- ----cGGCCCCACGAAAGUGGACCCGg -3' miRNA: 3'- uacacCCGGGGUGUUUUCACCUGGGC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 68589 | 0.89 | 0.033478 |
Target: 5'- ----cGGCCCCACGAAAGUGGACCCGg -3' miRNA: 3'- uacacCCGGGGUGUUUUCACCUGGGC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 49566 | 0.88 | 0.039612 |
Target: 5'- -cGacGGCCCCGCGAAAGUGGACCCGa -3' miRNA: 3'- uaCacCCGGGGUGUUUUCACCUGGGC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 49316 | 0.86 | 0.053836 |
Target: 5'- -cGacGGCCCCACGAAAGUGGACCCa -3' miRNA: 3'- uaCacCCGGGGUGUUUUCACCUGGGc -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 49482 | 0.86 | 0.053836 |
Target: 5'- ----cGGCCCCACGAAAGUGGACCCa -3' miRNA: 3'- uacacCCGGGGUGUUUUCACCUGGGc -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 49397 | 0.86 | 0.053836 |
Target: 5'- ----cGGCCCCACGAAAGUGGACCCa -3' miRNA: 3'- uacacCCGGGGUGUUUUCACCUGGGc -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 68523 | 0.86 | 0.053837 |
Target: 5'- -cGacGGCCCCACGAAAGUGGACCCa -3' miRNA: 3'- uaCacCCGGGGUGUUUUCACCUGGGc -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 49228 | 0.85 | 0.061841 |
Target: 5'- ----cGGCCCCACGAAAGUGGACCCu -3' miRNA: 3'- uacacCCGGGGUGUUUUCACCUGGGc -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 68703 | 0.78 | 0.190949 |
Target: 5'- ----cGGCCCCACAAAAGUuGACCCGa -3' miRNA: 3'- uacacCCGGGGUGUUUUCAcCUGGGC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 51417 | 0.76 | 0.258093 |
Target: 5'- -cGUGGGCCCgGguUGAAGGUGGACCgGu -3' miRNA: 3'- uaCACCCGGGgU--GUUUUCACCUGGgC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 80841 | 0.72 | 0.410557 |
Target: 5'- -gGUGGGCCUCACc-----GGACCCGa -3' miRNA: 3'- uaCACCCGGGGUGuuuucaCCUGGGC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 51318 | 0.71 | 0.466022 |
Target: 5'- uUGUGGGCCgUgguUGAAGGUGGACCgGu -3' miRNA: 3'- uACACCCGGgGu--GUUUUCACCUGGgC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 60437 | 0.69 | 0.618261 |
Target: 5'- aAUGUGaGCCCCaccgcuGCAGAAcGUGGGCCUu -3' miRNA: 3'- -UACACcCGGGG------UGUUUU-CACCUGGGc -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 65942 | 0.68 | 0.639275 |
Target: 5'- aAUGUGGGCUCCACGuugaa--GCCCGg -3' miRNA: 3'- -UACACCCGGGGUGUuuucaccUGGGC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 28225 | 0.68 | 0.681159 |
Target: 5'- ---gGGGCUgCAUAugGGUGGACaCCGa -3' miRNA: 3'- uacaCCCGGgGUGUuuUCACCUG-GGC- -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 94142 | 0.68 | 0.681159 |
Target: 5'- cGUGUuGGCCCUuuGguGAGGUGGACCg- -3' miRNA: 3'- -UACAcCCGGGG--UguUUUCACCUGGgc -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 75596 | 0.67 | 0.709081 |
Target: 5'- aAUGUuGGCCcaagaauugcgcccCCACucuAGUGGACCCa -3' miRNA: 3'- -UACAcCCGG--------------GGUGuuuUCACCUGGGc -5' |
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11368 | 3' | -56.9 | NC_003084.1 | + | 53888 | 0.67 | 0.712157 |
Target: 5'- -cGUGGGCUUCACc--AGUGcGAuCCCGa -3' miRNA: 3'- uaCACCCGGGGUGuuuUCAC-CU-GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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