Results 21 - 27 of 27 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11368 | 3' | -56.9 | NC_003084.1 | + | 49482 | 0.86 | 0.053836 |
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Target: 5'- ----cGGCCCCACGAAAGUGGACCCa -3' miRNA: 3'- uacacCCGGGGUGUUUUCACCUGGGc -5' |
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| 11368 | 3' | -56.9 | NC_003084.1 | + | 49316 | 0.86 | 0.053836 |
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Target: 5'- -cGacGGCCCCACGAAAGUGGACCCa -3' miRNA: 3'- uaCacCCGGGGUGUUUUCACCUGGGc -5' |
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| 11368 | 3' | -56.9 | NC_003084.1 | + | 49566 | 0.88 | 0.039612 |
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Target: 5'- -cGacGGCCCCGCGAAAGUGGACCCGa -3' miRNA: 3'- uaCacCCGGGGUGUUUUCACCUGGGC- -5' |
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| 11368 | 3' | -56.9 | NC_003084.1 | + | 68589 | 0.89 | 0.033478 |
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Target: 5'- ----cGGCCCCACGAAAGUGGACCCGg -3' miRNA: 3'- uacacCCGGGGUGUUUUCACCUGGGC- -5' |
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| 11368 | 3' | -56.9 | NC_003084.1 | + | 68444 | 0.89 | 0.033478 |
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Target: 5'- ----cGGCCCCACGAAAGUGGACCCGg -3' miRNA: 3'- uacacCCGGGGUGUUUUCACCUGGGC- -5' |
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| 11368 | 3' | -56.9 | NC_003084.1 | + | 37877 | 0.9 | 0.029918 |
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Target: 5'- uUG-GcGGCCCCACAAAAGUGGACCCGu -3' miRNA: 3'- uACaC-CCGGGGUGUUUUCACCUGGGC- -5' |
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| 11368 | 3' | -56.9 | NC_003084.1 | + | 37812 | 1.06 | 0.002191 |
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Target: 5'- aAUGUGGGCCCCACAAAAGUGGACCCGu -3' miRNA: 3'- -UACACCCGGGGUGUUUUCACCUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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