Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11368 | 5' | -48.2 | NC_003084.1 | + | 37912 | 0.66 | 0.995723 |
Target: 5'- uGCUAACaaaugacaUUUUUCAUuuaAUGGAGCCgCAGu -3' miRNA: 3'- cCGAUUG--------AAAAGGUA---UACCUCGG-GUU- -5' |
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11368 | 5' | -48.2 | NC_003084.1 | + | 97408 | 0.66 | 0.994959 |
Target: 5'- uGGCUGACUUUgaggggcaccgCCAgGUGGuuCCCGc -3' miRNA: 3'- -CCGAUUGAAAa----------GGUaUACCucGGGUu -5' |
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11368 | 5' | -48.2 | NC_003084.1 | + | 37948 | 0.67 | 0.991981 |
Target: 5'- ---aGACgggUCCAcuuuUGUGGGGCCCAc -3' miRNA: 3'- ccgaUUGaaaAGGU----AUACCUCGGGUu -5' |
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11368 | 5' | -48.2 | NC_003084.1 | + | 64068 | 0.68 | 0.979657 |
Target: 5'- uGGagGACgggUUUCCAc-UGGGGCCCAAu -3' miRNA: 3'- -CCgaUUGa--AAAGGUauACCUCGGGUU- -5' |
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11368 | 5' | -48.2 | NC_003084.1 | + | 42318 | 0.69 | 0.974363 |
Target: 5'- aGGUUGAUg--UCCucgaccUGGAGCCCGu -3' miRNA: 3'- -CCGAUUGaaaAGGuau---ACCUCGGGUu -5' |
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11368 | 5' | -48.2 | NC_003084.1 | + | 66014 | 0.69 | 0.971368 |
Target: 5'- gGGCUAauaaaguacuGCUUggCCA--UGGAGUCCAu -3' miRNA: 3'- -CCGAU----------UGAAaaGGUauACCUCGGGUu -5' |
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11368 | 5' | -48.2 | NC_003084.1 | + | 48711 | 0.7 | 0.95259 |
Target: 5'- aGGCcGACU--UCCAUcaggugGUGGAGCUCGGu -3' miRNA: 3'- -CCGaUUGAaaAGGUA------UACCUCGGGUU- -5' |
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11368 | 5' | -48.2 | NC_003084.1 | + | 1763 | 0.7 | 0.943179 |
Target: 5'- uGGCgugAACUgugCaaggAUGGAGCCCAGg -3' miRNA: 3'- -CCGa--UUGAaaaGgua-UACCUCGGGUU- -5' |
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11368 | 5' | -48.2 | NC_003084.1 | + | 37847 | 1.09 | 0.009605 |
Target: 5'- gGGCUAACUUUUCCAUAUGGAGCCCAAc -3' miRNA: 3'- -CCGAUUGAAAAGGUAUACCUCGGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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