miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11371 3' -42.1 NC_003084.1 + 7145 0.66 1
Target:  5'- cGUGGUgggauacGGUGGUGCUGAg-------- -3'
miRNA:   3'- -CAUCAa------CCACCACGAUUguaaauuuc -5'
11371 3' -42.1 NC_003084.1 + 80148 0.66 1
Target:  5'- uUGGUcgcaUGGUGGUGCacgaagaUGACAcgUUUGAAc -3'
miRNA:   3'- cAUCA----ACCACCACG-------AUUGU--AAAUUUc -5'
11371 3' -42.1 NC_003084.1 + 68929 0.67 0.999999
Target:  5'- -----cGGUGGUGCUAGCu------- -3'
miRNA:   3'- caucaaCCACCACGAUUGuaaauuuc -5'
11371 3' -42.1 NC_003084.1 + 34270 0.68 0.999994
Target:  5'- cGUGGUacUGGUGGUGCUucugauCGUg----- -3'
miRNA:   3'- -CAUCA--ACCACCACGAuu----GUAaauuuc -5'
11371 3' -42.1 NC_003084.1 + 2654 0.68 0.999987
Target:  5'- uGUAGUgGGUGcUGCUAGCGUa----- -3'
miRNA:   3'- -CAUCAaCCACcACGAUUGUAaauuuc -5'
11371 3' -42.1 NC_003084.1 + 49841 0.69 0.999973
Target:  5'- aUGGUgugcagaaugUGGUGGUGgUAACAUUUu--- -3'
miRNA:   3'- cAUCA----------ACCACCACgAUUGUAAAuuuc -5'
11371 3' -42.1 NC_003084.1 + 68553 0.69 0.999949
Target:  5'- ------uGUGGUGCUAACAUUUGu-- -3'
miRNA:   3'- caucaacCACCACGAUUGUAAAUuuc -5'
11371 3' -42.1 NC_003084.1 + 49455 0.69 0.999949
Target:  5'- ------uGUGGUGCUAACAUUUGu-- -3'
miRNA:   3'- caucaacCACCACGAUUGUAAAUuuc -5'
11371 3' -42.1 NC_003084.1 + 49286 0.69 0.999949
Target:  5'- ------uGUGGUGCUAACAUUUGu-- -3'
miRNA:   3'- caucaacCACCACGAUUGUAAAUuuc -5'
11371 3' -42.1 NC_003084.1 + 49371 0.69 0.999949
Target:  5'- ------uGUGGUGCUAACAUUUGu-- -3'
miRNA:   3'- caucaacCACCACGAUUGUAAAUuuc -5'
11371 3' -42.1 NC_003084.1 + 68811 0.72 0.999051
Target:  5'- cGUuGUcGGUGGUGCUAACAc------ -3'
miRNA:   3'- -CAuCAaCCACCACGAUUGUaaauuuc -5'
11371 3' -42.1 NC_003084.1 + 68552 0.73 0.99821
Target:  5'- cGUAGUcGGUGGUGCcAACAa------ -3'
miRNA:   3'- -CAUCAaCCACCACGaUUGUaaauuuc -5'
11371 3' -42.1 NC_003084.1 + 68421 0.73 0.997354
Target:  5'- -cGGUUGGUGGUGCacuuCAUcgAGGGu -3'
miRNA:   3'- caUCAACCACCACGauu-GUAaaUUUC- -5'
11371 3' -42.1 NC_003084.1 + 48638 0.73 0.996813
Target:  5'- cGUGGUUcGGUGGUGCUugGGCAa------ -3'
miRNA:   3'- -CAUCAA-CCACCACGA--UUGUaaauuuc -5'
11371 3' -42.1 NC_003084.1 + 23036 0.75 0.992565
Target:  5'- ----aUGGUGGUGCUGuACAUUUAc-- -3'
miRNA:   3'- caucaACCACCACGAU-UGUAAAUuuc -5'
11371 3' -42.1 NC_003084.1 + 62396 0.75 0.992565
Target:  5'- gGUGGUgcucgcGGUGGUGCUAcgguACAgugUUAAGGc -3'
miRNA:   3'- -CAUCAa-----CCACCACGAU----UGUa--AAUUUC- -5'
11371 3' -42.1 NC_003084.1 + 49544 0.77 0.964685
Target:  5'- cUGGggUGGUGGUGCcAACAUUUAGc- -3'
miRNA:   3'- cAUCa-ACCACCACGaUUGUAAAUUuc -5'
11371 3' -42.1 NC_003084.1 + 68631 0.88 0.57213
Target:  5'- --cGUUGGUGGUGCUAACAgUUAAAa -3'
miRNA:   3'- cauCAACCACCACGAUUGUaAAUUUc -5'
11371 3' -42.1 NC_003084.1 + 49207 1.01 0.136735
Target:  5'- --cGUUGGUGGUGCUAACAUUUAAAGu -3'
miRNA:   3'- cauCAACCACCACGAUUGUAAAUUUC- -5'
11371 3' -42.1 NC_003084.1 + 49374 1.1 0.041524
Target:  5'- cGUAGUUGGUGGUGCUAGCAUUUAAGGc -3'
miRNA:   3'- -CAUCAACCACCACGAUUGUAAAUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.