Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11371 | 5' | -43.4 | NC_003084.1 | + | 68984 | 0.68 | 0.999928 |
Target: 5'- aAGUUuaaAAAUGUgAGCACCACucAUGu -3' miRNA: 3'- -UCGAug-UUUACAaUCGUGGUGuuUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 12991 | 0.68 | 0.999928 |
Target: 5'- uAGCUGC-AAUGUUuGCGuCCACAc--- -3' miRNA: 3'- -UCGAUGuUUACAAuCGU-GGUGUuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 8590 | 0.68 | 0.999928 |
Target: 5'- -uCUGC-GGUGcUAGCACCACAGGa- -3' miRNA: 3'- ucGAUGuUUACaAUCGUGGUGUUUac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 87201 | 0.67 | 0.999972 |
Target: 5'- gAGaCUGaaaGGAUGggucgUGGCACCGCGGAa- -3' miRNA: 3'- -UC-GAUg--UUUACa----AUCGUGGUGUUUac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 31960 | 0.67 | 0.99998 |
Target: 5'- cAGUUGCcggacucgGUUGGCACCACcGcgGg -3' miRNA: 3'- -UCGAUGuuua----CAAUCGUGGUGuUuaC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 105238 | 0.67 | 0.99998 |
Target: 5'- gAGgUGCAGGUGaagguuucGCGCCACcAGAUGg -3' miRNA: 3'- -UCgAUGUUUACaau-----CGUGGUG-UUUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 97763 | 0.67 | 0.999984 |
Target: 5'- cGCUACGGuccacaucGCACCGCGGAUa -3' miRNA: 3'- uCGAUGUUuacaau--CGUGGUGUUUAc -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 70638 | 0.67 | 0.999986 |
Target: 5'- gAGCUGCAcGUGUUcaaAGC-CCACu---- -3' miRNA: 3'- -UCGAUGUuUACAA---UCGuGGUGuuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 107907 | 0.67 | 0.999986 |
Target: 5'- cAGUUACccAAcgGUUGGCACC-CGGAc- -3' miRNA: 3'- -UCGAUG--UUuaCAAUCGUGGuGUUUac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 43083 | 0.69 | 0.99952 |
Target: 5'- cGCUGCGA--GUUGGCGCUcaugGCAAAUu -3' miRNA: 3'- uCGAUGUUuaCAAUCGUGG----UGUUUAc -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 1803 | 0.7 | 0.99904 |
Target: 5'- cAGUUugAAccgucGUGUUAGCcCCACGAAUc -3' miRNA: 3'- -UCGAugUU-----UACAAUCGuGGUGUUUAc -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 49684 | 0.78 | 0.912918 |
Target: 5'- cAGCUAaagcUAAAUGUUGGCACCACc---- -3' miRNA: 3'- -UCGAU----GUUUACAAUCGUGGUGuuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 49438 | 0.74 | 0.977461 |
Target: 5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3' miRNA: 3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 49354 | 0.74 | 0.977461 |
Target: 5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3' miRNA: 3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 49269 | 0.74 | 0.977461 |
Target: 5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3' miRNA: 3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 6377 | 0.74 | 0.977731 |
Target: 5'- gAGCUGCAAAU--UGGCACCAUuggacaGGGUGa -3' miRNA: 3'- -UCGAUGUUUAcaAUCGUGGUG------UUUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 54164 | 0.74 | 0.984765 |
Target: 5'- cGGCUACGAcuacgGGCACCACGGGa- -3' miRNA: 3'- -UCGAUGUUuacaaUCGUGGUGUUUac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 68359 | 0.73 | 0.991216 |
Target: 5'- gGGCUACAGcuuggauacgcugGUGgaagugAGCACCGCAuGUGc -3' miRNA: 3'- -UCGAUGUU-------------UACaa----UCGUGGUGUuUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 62379 | 0.72 | 0.995447 |
Target: 5'- uGCUACGguacAGUGUUaaGGCugCACAAAg- -3' miRNA: 3'- uCGAUGU----UUACAA--UCGugGUGUUUac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 46414 | 0.71 | 0.998197 |
Target: 5'- uAGCUcGCuGAAUGUUAcGCACCGCAc--- -3' miRNA: 3'- -UCGA-UG-UUUACAAU-CGUGGUGUuuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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