Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11371 | 5' | -43.4 | NC_003084.1 | + | 1497 | 0.66 | 0.999995 |
Target: 5'- cAGCUccaAAAUGUUGaCACCACAGc-- -3' miRNA: 3'- -UCGAug-UUUACAAUcGUGGUGUUuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 1803 | 0.7 | 0.99904 |
Target: 5'- cAGUUugAAccgucGUGUUAGCcCCACGAAUc -3' miRNA: 3'- -UCGAugUU-----UACAAUCGuGGUGUUUAc -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 2021 | 0.69 | 0.999625 |
Target: 5'- cAGCUcCAAAuUGUUcGCACCAUAAuUGa -3' miRNA: 3'- -UCGAuGUUU-ACAAuCGUGGUGUUuAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 6377 | 0.74 | 0.977731 |
Target: 5'- gAGCUGCAAAU--UGGCACCAUuggacaGGGUGa -3' miRNA: 3'- -UCGAUGUUUAcaAUCGUGGUG------UUUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 8590 | 0.68 | 0.999928 |
Target: 5'- -uCUGC-GGUGcUAGCACCACAGGa- -3' miRNA: 3'- ucGAUGuUUACaAUCGUGGUGUUUac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 11074 | 0.66 | 0.999997 |
Target: 5'- aAGCUaaaGCGGauuGUGggGGCAaguaCACGGAUGa -3' miRNA: 3'- -UCGA---UGUU---UACaaUCGUg---GUGUUUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 12991 | 0.68 | 0.999928 |
Target: 5'- uAGCUGC-AAUGUUuGCGuCCACAc--- -3' miRNA: 3'- -UCGAUGuUUACAAuCGU-GGUGUuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 26466 | 0.67 | 0.999986 |
Target: 5'- gGGCUcGCGAGUG-UGGCAaauuugcUCGCGGAUGc -3' miRNA: 3'- -UCGA-UGUUUACaAUCGU-------GGUGUUUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 28226 | 0.66 | 0.999997 |
Target: 5'- gGGCUGCAuAUGggUGGaCACCGau-AUGa -3' miRNA: 3'- -UCGAUGUuUACa-AUC-GUGGUguuUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 31960 | 0.67 | 0.99998 |
Target: 5'- cAGUUGCcggacucgGUUGGCACCACcGcgGg -3' miRNA: 3'- -UCGAUGuuua----CAAUCGUGGUGuUuaC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 37802 | 0.7 | 0.999233 |
Target: 5'- uAGCaccGCAAAUGUgGGCcCCACAAaaGUGg -3' miRNA: 3'- -UCGa--UGUUUACAaUCGuGGUGUU--UAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 38639 | 0.68 | 0.999829 |
Target: 5'- cGGUUcccGCGGGUGUgcAGC-CCACAAAUGc -3' miRNA: 3'- -UCGA---UGUUUACAa-UCGuGGUGUUUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 43083 | 0.69 | 0.99952 |
Target: 5'- cGCUGCGA--GUUGGCGCUcaugGCAAAUu -3' miRNA: 3'- uCGAUGUUuaCAAUCGUGG----UGUUUAc -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 46414 | 0.71 | 0.998197 |
Target: 5'- uAGCUcGCuGAAUGUUAcGCACCGCAc--- -3' miRNA: 3'- -UCGA-UG-UUUACAAU-CGUGGUGUuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 46559 | 0.66 | 0.999995 |
Target: 5'- -uCUACAGAUGUUGGC-CCAg----- -3' miRNA: 3'- ucGAUGUUUACAAUCGuGGUguuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 49071 | 0.68 | 0.999903 |
Target: 5'- cGCgACgAAAUGUUAGCACCguauACGGAg- -3' miRNA: 3'- uCGaUG-UUUACAAUCGUGG----UGUUUac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 49156 | 1.1 | 0.028429 |
Target: 5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3' miRNA: 3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 49241 | 1.1 | 0.028429 |
Target: 5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3' miRNA: 3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 49269 | 0.74 | 0.977461 |
Target: 5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3' miRNA: 3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5' |
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11371 | 5' | -43.4 | NC_003084.1 | + | 49326 | 1.1 | 0.028429 |
Target: 5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3' miRNA: 3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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