miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11372 5' -43.4 NC_003084.1 + 1497 0.66 0.999995
Target:  5'- cAGCUccaAAAUGUUGaCACCACAGc-- -3'
miRNA:   3'- -UCGAug-UUUACAAUcGUGGUGUUuac -5'
11372 5' -43.4 NC_003084.1 + 1803 0.7 0.99904
Target:  5'- cAGUUugAAccgucGUGUUAGCcCCACGAAUc -3'
miRNA:   3'- -UCGAugUU-----UACAAUCGuGGUGUUUAc -5'
11372 5' -43.4 NC_003084.1 + 2021 0.69 0.999625
Target:  5'- cAGCUcCAAAuUGUUcGCACCAUAAuUGa -3'
miRNA:   3'- -UCGAuGUUU-ACAAuCGUGGUGUUuAC- -5'
11372 5' -43.4 NC_003084.1 + 6377 0.74 0.977731
Target:  5'- gAGCUGCAAAU--UGGCACCAUuggacaGGGUGa -3'
miRNA:   3'- -UCGAUGUUUAcaAUCGUGGUG------UUUAC- -5'
11372 5' -43.4 NC_003084.1 + 8590 0.68 0.999928
Target:  5'- -uCUGC-GGUGcUAGCACCACAGGa- -3'
miRNA:   3'- ucGAUGuUUACaAUCGUGGUGUUUac -5'
11372 5' -43.4 NC_003084.1 + 11074 0.66 0.999997
Target:  5'- aAGCUaaaGCGGauuGUGggGGCAaguaCACGGAUGa -3'
miRNA:   3'- -UCGA---UGUU---UACaaUCGUg---GUGUUUAC- -5'
11372 5' -43.4 NC_003084.1 + 12991 0.68 0.999928
Target:  5'- uAGCUGC-AAUGUUuGCGuCCACAc--- -3'
miRNA:   3'- -UCGAUGuUUACAAuCGU-GGUGUuuac -5'
11372 5' -43.4 NC_003084.1 + 26466 0.67 0.999986
Target:  5'- gGGCUcGCGAGUG-UGGCAaauuugcUCGCGGAUGc -3'
miRNA:   3'- -UCGA-UGUUUACaAUCGU-------GGUGUUUAC- -5'
11372 5' -43.4 NC_003084.1 + 28226 0.66 0.999997
Target:  5'- gGGCUGCAuAUGggUGGaCACCGau-AUGa -3'
miRNA:   3'- -UCGAUGUuUACa-AUC-GUGGUguuUAC- -5'
11372 5' -43.4 NC_003084.1 + 31960 0.67 0.99998
Target:  5'- cAGUUGCcggacucgGUUGGCACCACcGcgGg -3'
miRNA:   3'- -UCGAUGuuua----CAAUCGUGGUGuUuaC- -5'
11372 5' -43.4 NC_003084.1 + 37802 0.7 0.999233
Target:  5'- uAGCaccGCAAAUGUgGGCcCCACAAaaGUGg -3'
miRNA:   3'- -UCGa--UGUUUACAaUCGuGGUGUU--UAC- -5'
11372 5' -43.4 NC_003084.1 + 38639 0.68 0.999829
Target:  5'- cGGUUcccGCGGGUGUgcAGC-CCACAAAUGc -3'
miRNA:   3'- -UCGA---UGUUUACAa-UCGuGGUGUUUAC- -5'
11372 5' -43.4 NC_003084.1 + 43083 0.69 0.99952
Target:  5'- cGCUGCGA--GUUGGCGCUcaugGCAAAUu -3'
miRNA:   3'- uCGAUGUUuaCAAUCGUGG----UGUUUAc -5'
11372 5' -43.4 NC_003084.1 + 46414 0.71 0.998197
Target:  5'- uAGCUcGCuGAAUGUUAcGCACCGCAc--- -3'
miRNA:   3'- -UCGA-UG-UUUACAAU-CGUGGUGUuuac -5'
11372 5' -43.4 NC_003084.1 + 46559 0.66 0.999995
Target:  5'- -uCUACAGAUGUUGGC-CCAg----- -3'
miRNA:   3'- ucGAUGUUUACAAUCGuGGUguuuac -5'
11372 5' -43.4 NC_003084.1 + 49071 0.68 0.999903
Target:  5'- cGCgACgAAAUGUUAGCACCguauACGGAg- -3'
miRNA:   3'- uCGaUG-UUUACAAUCGUGG----UGUUUac -5'
11372 5' -43.4 NC_003084.1 + 49156 1.1 0.028429
Target:  5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3'
miRNA:   3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5'
11372 5' -43.4 NC_003084.1 + 49241 1.1 0.028429
Target:  5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3'
miRNA:   3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5'
11372 5' -43.4 NC_003084.1 + 49269 0.74 0.977461
Target:  5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3'
miRNA:   3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5'
11372 5' -43.4 NC_003084.1 + 49326 1.1 0.028429
Target:  5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3'
miRNA:   3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.