miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11372 5' -43.4 NC_003084.1 + 2021 0.69 0.999625
Target:  5'- cAGCUcCAAAuUGUUcGCACCAUAAuUGa -3'
miRNA:   3'- -UCGAuGUUU-ACAAuCGUGGUGUUuAC- -5'
11372 5' -43.4 NC_003084.1 + 43083 0.69 0.99952
Target:  5'- cGCUGCGA--GUUGGCGCUcaugGCAAAUu -3'
miRNA:   3'- uCGAUGUUuaCAAUCGUGG----UGUUUAc -5'
11372 5' -43.4 NC_003084.1 + 102572 0.7 0.999391
Target:  5'- uGGCUGCAGcAUGagGGCGCCGgGAu-- -3'
miRNA:   3'- -UCGAUGUU-UACaaUCGUGGUgUUuac -5'
11372 5' -43.4 NC_003084.1 + 37802 0.7 0.999233
Target:  5'- uAGCaccGCAAAUGUgGGCcCCACAAaaGUGg -3'
miRNA:   3'- -UCGa--UGUUUACAaUCGuGGUGUU--UAC- -5'
11372 5' -43.4 NC_003084.1 + 1803 0.7 0.99904
Target:  5'- cAGUUugAAccgucGUGUUAGCcCCACGAAUc -3'
miRNA:   3'- -UCGAugUU-----UACAAUCGuGGUGUUUAc -5'
11372 5' -43.4 NC_003084.1 + 46414 0.71 0.998197
Target:  5'- uAGCUcGCuGAAUGUUAcGCACCGCAc--- -3'
miRNA:   3'- -UCGA-UG-UUUACAAU-CGUGGUGUuuac -5'
11372 5' -43.4 NC_003084.1 + 52987 0.71 0.997804
Target:  5'- uGCUAUAAAUGguggUAGCACCGg----- -3'
miRNA:   3'- uCGAUGUUUACa---AUCGUGGUguuuac -5'
11372 5' -43.4 NC_003084.1 + 86959 0.72 0.996173
Target:  5'- cAGCUGCAAcUGUUcaucgAGCACCAUcgGUu -3'
miRNA:   3'- -UCGAUGUUuACAA-----UCGUGGUGuuUAc -5'
11372 5' -43.4 NC_003084.1 + 62379 0.72 0.995447
Target:  5'- uGCUACGguacAGUGUUaaGGCugCACAAAg- -3'
miRNA:   3'- uCGAUGU----UUACAA--UCGugGUGUUUac -5'
11372 5' -43.4 NC_003084.1 + 68359 0.73 0.991216
Target:  5'- gGGCUACAGcuuggauacgcugGUGgaagugAGCACCGCAuGUGc -3'
miRNA:   3'- -UCGAUGUU-------------UACaa----UCGUGGUGUuUAC- -5'
11372 5' -43.4 NC_003084.1 + 68558 0.74 0.984765
Target:  5'- uGCUaACAuuUGUagcUAGCACCACAAAc- -3'
miRNA:   3'- uCGA-UGUuuACA---AUCGUGGUGUUUac -5'
11372 5' -43.4 NC_003084.1 + 54164 0.74 0.984765
Target:  5'- cGGCUACGAcuacgGGCACCACGGGa- -3'
miRNA:   3'- -UCGAUGUUuacaaUCGUGGUGUUUac -5'
11372 5' -43.4 NC_003084.1 + 75434 0.74 0.98264
Target:  5'- gAGCaccACAAAUGUUGGguCCACuaGAGUGg -3'
miRNA:   3'- -UCGa--UGUUUACAAUCguGGUG--UUUAC- -5'
11372 5' -43.4 NC_003084.1 + 6377 0.74 0.977731
Target:  5'- gAGCUGCAAAU--UGGCACCAUuggacaGGGUGa -3'
miRNA:   3'- -UCGAUGUUUAcaAUCGUGGUG------UUUAC- -5'
11372 5' -43.4 NC_003084.1 + 49354 0.74 0.977461
Target:  5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3'
miRNA:   3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5'
11372 5' -43.4 NC_003084.1 + 49438 0.74 0.977461
Target:  5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3'
miRNA:   3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5'
11372 5' -43.4 NC_003084.1 + 49269 0.74 0.977461
Target:  5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3'
miRNA:   3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5'
11372 5' -43.4 NC_003084.1 + 49684 0.78 0.912918
Target:  5'- cAGCUAaagcUAAAUGUUGGCACCACc---- -3'
miRNA:   3'- -UCGAU----GUUUACAAUCGUGGUGuuuac -5'
11372 5' -43.4 NC_003084.1 + 49326 1.1 0.028429
Target:  5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3'
miRNA:   3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5'
11372 5' -43.4 NC_003084.1 + 49241 1.1 0.028429
Target:  5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3'
miRNA:   3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.