miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11373 3' -52.7 NC_003084.1 + 48099 0.66 0.947981
Target:  5'- ----aGAGCACAACCGcucaguguGCA-CGGGcUCg -3'
miRNA:   3'- uuacaCUCGUGUUGGC--------UGUaGCCC-AG- -5'
11373 3' -52.7 NC_003084.1 + 92469 0.66 0.943319
Target:  5'- cGGUGUacGAGCACAAgUCGGCggcgcuGUUGGGUUg -3'
miRNA:   3'- -UUACA--CUCGUGUU-GGCUG------UAGCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 106794 0.66 0.922009
Target:  5'- -uUGUGAGCACcACCGuAgGUCuccaGGGUg -3'
miRNA:   3'- uuACACUCGUGuUGGC-UgUAG----CCCAg -5'
11373 3' -52.7 NC_003084.1 + 38649 0.67 0.916012
Target:  5'- gGGUGUGcAGCccacaaaugccAUAGCuCGACcggAUCGGGUCg -3'
miRNA:   3'- -UUACAC-UCG-----------UGUUG-GCUG---UAGCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 889 0.67 0.894342
Target:  5'- aGAUGUGcAGCGCGACCugaacaaggugcucGGCGagauUCaGGGUCg -3'
miRNA:   3'- -UUACAC-UCGUGUUGG--------------CUGU----AG-CCCAG- -5'
11373 3' -52.7 NC_003084.1 + 30771 0.67 0.889381
Target:  5'- --cGUGAGCACGAauc-CAUCGGGcCg -3'
miRNA:   3'- uuaCACUCGUGUUggcuGUAGCCCaG- -5'
11373 3' -52.7 NC_003084.1 + 57980 0.68 0.866731
Target:  5'- gGAUGUGuaCACGACCGu--UUGGGUCg -3'
miRNA:   3'- -UUACACucGUGUUGGCuguAGCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 75430 0.69 0.824353
Target:  5'- -uUGUGAGCACcACaaAUGUUGGGUCc -3'
miRNA:   3'- uuACACUCGUGuUGgcUGUAGCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 73277 0.7 0.796507
Target:  5'- gGAUGUGGGCACGuccuccuucucgACCGuaACGaagaaCGGGUCa -3'
miRNA:   3'- -UUACACUCGUGU------------UGGC--UGUa----GCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 101287 0.7 0.777093
Target:  5'- --aGUGAGCugGAuCCGGauUCGGGUUu -3'
miRNA:   3'- uuaCACUCGugUU-GGCUguAGCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 48998 0.7 0.764157
Target:  5'- --gGUGAGCACAauuugucacacaccACCGA--UCGGGUa -3'
miRNA:   3'- uuaCACUCGUGU--------------UGGCUguAGCCCAg -5'
11373 3' -52.7 NC_003084.1 + 61501 0.71 0.73557
Target:  5'- -uUGUGAGuCGCAGuuUCGACGugcugcaccaaacUCGGGUCg -3'
miRNA:   3'- uuACACUC-GUGUU--GGCUGU-------------AGCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 41265 0.71 0.715708
Target:  5'- --aGUGuGCGCAAUCGuuacaguCAUCGGGUg -3'
miRNA:   3'- uuaCACuCGUGUUGGCu------GUAGCCCAg -5'
11373 3' -52.7 NC_003084.1 + 51348 0.73 0.608097
Target:  5'- -cUGUGAGCugGACCGAgAuuagaUUGGGUa -3'
miRNA:   3'- uuACACUCGugUUGGCUgU-----AGCCCAg -5'
11373 3' -52.7 NC_003084.1 + 68976 0.75 0.512528
Target:  5'- aAAUGUGAGCACcACUcAUGUCGGGUg -3'
miRNA:   3'- -UUACACUCGUGuUGGcUGUAGCCCAg -5'
11373 3' -52.7 NC_003084.1 + 68593 0.77 0.387287
Target:  5'- aAAUGUuAGCuCAACCGACAcCGGGUCc -3'
miRNA:   3'- -UUACAcUCGuGUUGGCUGUaGCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 68738 0.84 0.147743
Target:  5'- -cUGUGuuAGCACGACCGACAcCGGGUCc -3'
miRNA:   3'- uuACAC--UCGUGUUGGCUGUaGCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 68852 0.85 0.128872
Target:  5'- aAAUGUGAGCACAACaaAUGUCGGGUCa -3'
miRNA:   3'- -UUACACUCGUGUUGgcUGUAGCCCAG- -5'
11373 3' -52.7 NC_003084.1 + 49414 1.07 0.005074
Target:  5'- aAAUGUGAGCACAACCGACAUCGGGUCc -3'
miRNA:   3'- -UUACACUCGUGUUGGCUGUAGCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.