miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11373 5' -56.4 NC_003084.1 + 101446 0.66 0.827321
Target:  5'- -uGGGCCGUCGUUA--CGUGCgAGa- -3'
miRNA:   3'- gcCCCGGCAGCAAUcaGCACGaUCgu -5'
11373 5' -56.4 NC_003084.1 + 103378 0.66 0.81864
Target:  5'- aGGGGUaaUCG-UGGUCGUGCUGa-- -3'
miRNA:   3'- gCCCCGgcAGCaAUCAGCACGAUcgu -5'
11373 5' -56.4 NC_003084.1 + 120 0.69 0.651753
Target:  5'- aCGGGGCUGUUGUUcAG-CGUGCacucguucAGCGu -3'
miRNA:   3'- -GCCCCGGCAGCAA-UCaGCACGa-------UCGU- -5'
11373 5' -56.4 NC_003084.1 + 68941 0.71 0.518053
Target:  5'- uGGGGCCGauaacGGUgGUGCUAGCu -3'
miRNA:   3'- gCCCCGGCagcaaUCAgCACGAUCGu -5'
11373 5' -56.4 NC_003084.1 + 49113 0.77 0.249223
Target:  5'- uGGGGCCGUaGUUGGUgGUGCUAaCAu -3'
miRNA:   3'- gCCCCGGCAgCAAUCAgCACGAUcGU- -5'
11373 5' -56.4 NC_003084.1 + 49283 0.77 0.249223
Target:  5'- uGGGGCCGUaGUUGGUgGUGCUAaCAu -3'
miRNA:   3'- gCCCCGGCAgCAAUCAgCACGAUcGU- -5'
11373 5' -56.4 NC_003084.1 + 68817 0.78 0.225814
Target:  5'- uGGGGCCGUUGUcGGUgGUGCUaacacugggugGGCAc -3'
miRNA:   3'- gCCCCGGCAGCAaUCAgCACGA-----------UCGU- -5'
11373 5' -56.4 NC_003084.1 + 68703 0.86 0.072923
Target:  5'- uGGGGCCGUUGUUuGUgGUGCUAGCu -3'
miRNA:   3'- gCCCCGGCAGCAAuCAgCACGAUCGu -5'
11373 5' -56.4 NC_003084.1 + 49198 0.88 0.052474
Target:  5'- uGGGGCCGUCGUUGGUgGUGCUAaCAu -3'
miRNA:   3'- gCCCCGGCAGCAAUCAgCACGAUcGU- -5'
11373 5' -56.4 NC_003084.1 + 68640 0.88 0.049657
Target:  5'- uGGGGCCGUCGUUGGUgGUGCUAaCAg -3'
miRNA:   3'- gCCCCGGCAGCAAUCAgCACGAUcGU- -5'
11373 5' -56.4 NC_003084.1 + 49368 0.89 0.043244
Target:  5'- uGGGGCCGUaGUUGGUgGUGCUAGCAu -3'
miRNA:   3'- gCCCCGGCAgCAAUCAgCACGAUCGU- -5'
11373 5' -56.4 NC_003084.1 + 49448 1.08 0.002015
Target:  5'- gCGGGGCCGUCGUUAGUCGUGCUAGCAu -3'
miRNA:   3'- -GCCCCGGCAGCAAUCAGCACGAUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.