Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11373 | 5' | -56.4 | NC_003084.1 | + | 49448 | 1.08 | 0.002015 |
Target: 5'- gCGGGGCCGUCGUUAGUCGUGCUAGCAu -3' miRNA: 3'- -GCCCCGGCAGCAAUCAGCACGAUCGU- -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 49368 | 0.89 | 0.043244 |
Target: 5'- uGGGGCCGUaGUUGGUgGUGCUAGCAu -3' miRNA: 3'- gCCCCGGCAgCAAUCAgCACGAUCGU- -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 68640 | 0.88 | 0.049657 |
Target: 5'- uGGGGCCGUCGUUGGUgGUGCUAaCAg -3' miRNA: 3'- gCCCCGGCAGCAAUCAgCACGAUcGU- -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 49198 | 0.88 | 0.052474 |
Target: 5'- uGGGGCCGUCGUUGGUgGUGCUAaCAu -3' miRNA: 3'- gCCCCGGCAGCAAUCAgCACGAUcGU- -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 68703 | 0.86 | 0.072923 |
Target: 5'- uGGGGCCGUUGUUuGUgGUGCUAGCu -3' miRNA: 3'- gCCCCGGCAGCAAuCAgCACGAUCGu -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 68817 | 0.78 | 0.225814 |
Target: 5'- uGGGGCCGUUGUcGGUgGUGCUaacacugggugGGCAc -3' miRNA: 3'- gCCCCGGCAGCAaUCAgCACGA-----------UCGU- -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 49113 | 0.77 | 0.249223 |
Target: 5'- uGGGGCCGUaGUUGGUgGUGCUAaCAu -3' miRNA: 3'- gCCCCGGCAgCAAUCAgCACGAUcGU- -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 49283 | 0.77 | 0.249223 |
Target: 5'- uGGGGCCGUaGUUGGUgGUGCUAaCAu -3' miRNA: 3'- gCCCCGGCAgCAAUCAgCACGAUcGU- -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 68941 | 0.71 | 0.518053 |
Target: 5'- uGGGGCCGauaacGGUgGUGCUAGCu -3' miRNA: 3'- gCCCCGGCagcaaUCAgCACGAUCGu -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 120 | 0.69 | 0.651753 |
Target: 5'- aCGGGGCUGUUGUUcAG-CGUGCacucguucAGCGu -3' miRNA: 3'- -GCCCCGGCAGCAA-UCaGCACGa-------UCGU- -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 103378 | 0.66 | 0.81864 |
Target: 5'- aGGGGUaaUCG-UGGUCGUGCUGa-- -3' miRNA: 3'- gCCCCGgcAGCaAUCAGCACGAUcgu -5' |
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11373 | 5' | -56.4 | NC_003084.1 | + | 101446 | 0.66 | 0.827321 |
Target: 5'- -uGGGCCGUCGUUA--CGUGCgAGa- -3' miRNA: 3'- gcCCCGGCAGCAAUcaGCACGaUCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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