miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11374 5' -51.9 NC_003084.1 + 47573 0.66 0.967964
Target:  5'- uGCAauaUGGUGCUCACgaaggAGgaGCUGa -3'
miRNA:   3'- gCGUc--ACCACGAGUGaaa--UCgaUGGC- -5'
11374 5' -51.9 NC_003084.1 + 103980 0.66 0.960997
Target:  5'- cCGCucGGUGGaGCUcCACccgGGCUGCCc -3'
miRNA:   3'- -GCG--UCACCaCGA-GUGaaaUCGAUGGc -5'
11374 5' -51.9 NC_003084.1 + 41529 0.66 0.953045
Target:  5'- cCGCAGUGuGUggccGCUCACUUUGaCU-CCa -3'
miRNA:   3'- -GCGUCAC-CA----CGAGUGAAAUcGAuGGc -5'
11374 5' -51.9 NC_003084.1 + 55700 0.66 0.953045
Target:  5'- cCGCAc-GGUcaaGCUCACUUUGGCccCCGu -3'
miRNA:   3'- -GCGUcaCCA---CGAGUGAAAUCGauGGC- -5'
11374 5' -51.9 NC_003084.1 + 63138 0.67 0.94407
Target:  5'- aCGac-UGGUGCUCACggUGG-UGCCGa -3'
miRNA:   3'- -GCgucACCACGAGUGaaAUCgAUGGC- -5'
11374 5' -51.9 NC_003084.1 + 3311 0.67 0.928627
Target:  5'- uGCuGcUGGUGCU-GCUgcuGCUGCCGu -3'
miRNA:   3'- gCGuC-ACCACGAgUGAaauCGAUGGC- -5'
11374 5' -51.9 NC_003084.1 + 31740 0.68 0.910779
Target:  5'- uGCGGUGGUGCUaucgccaaACUUgcucuGUuaUACCGa -3'
miRNA:   3'- gCGUCACCACGAg-------UGAAau---CG--AUGGC- -5'
11374 5' -51.9 NC_003084.1 + 95087 0.68 0.904299
Target:  5'- uCGUcGUGGacgUGCUUggugugcacgGCUUUGGCUACCu -3'
miRNA:   3'- -GCGuCACC---ACGAG----------UGAAAUCGAUGGc -5'
11374 5' -51.9 NC_003084.1 + 64690 0.68 0.904299
Target:  5'- -aCGGUGGUGCUCAUUguaauucUGGUgGCCa -3'
miRNA:   3'- gcGUCACCACGAGUGAa------AUCGaUGGc -5'
11374 5' -51.9 NC_003084.1 + 43453 0.68 0.904299
Target:  5'- cCGCGGUGGcauugUGC-CGCaUUGGCcACCGc -3'
miRNA:   3'- -GCGUCACC-----ACGaGUGaAAUCGaUGGC- -5'
11374 5' -51.9 NC_003084.1 + 47499 0.68 0.897555
Target:  5'- uGCuGGUGGcGCUgCACUUUGGUUcCCGu -3'
miRNA:   3'- gCG-UCACCaCGA-GUGAAAUCGAuGGC- -5'
11374 5' -51.9 NC_003084.1 + 49548 0.69 0.875792
Target:  5'- gGUGGUGGUGC-CAacaUUUAGCUuuaGCUGa -3'
miRNA:   3'- gCGUCACCACGaGUg--AAAUCGA---UGGC- -5'
11374 5' -51.9 NC_003084.1 + 102870 0.7 0.816819
Target:  5'- uGCuGUcGGUGCUCACaUUGGUcggaaUACCGc -3'
miRNA:   3'- gCGuCA-CCACGAGUGaAAUCG-----AUGGC- -5'
11374 5' -51.9 NC_003084.1 + 99291 0.7 0.816819
Target:  5'- uGCAGUGGUGCguuaUCAUUUUcacAGCacggaagGCCGu -3'
miRNA:   3'- gCGUCACCACG----AGUGAAA---UCGa------UGGC- -5'
11374 5' -51.9 NC_003084.1 + 62400 0.71 0.768902
Target:  5'- uCGaGGUGGUGCUCGCggugguGCUACgGu -3'
miRNA:   3'- -GCgUCACCACGAGUGaaau--CGAUGgC- -5'
11374 5' -51.9 NC_003084.1 + 60561 0.74 0.620921
Target:  5'- aGCGGUGGgGCUCACaUUUGGUcAUCGa -3'
miRNA:   3'- gCGUCACCaCGAGUG-AAAUCGaUGGC- -5'
11374 5' -51.9 NC_003084.1 + 54369 0.78 0.398001
Target:  5'- uGgAGUGGUGCgacuuuggCACUUgAGCUGCCGu -3'
miRNA:   3'- gCgUCACCACGa-------GUGAAaUCGAUGGC- -5'
11374 5' -51.9 NC_003084.1 + 49645 1.09 0.004689
Target:  5'- gCGCAGUGGUGCUCACUUUAGCUACCGc -3'
miRNA:   3'- -GCGUCACCACGAGUGAAAUCGAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.