miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11376 3' -49.1 NC_003084.1 + 5335 0.66 0.991663
Target:  5'- uACCGGUGgUG-CGCCCAUAa----- -3'
miRNA:   3'- cUGGCCACgAUgGUGGGUAUaaauau -5'
11376 3' -49.1 NC_003084.1 + 65188 0.66 0.991663
Target:  5'- cGCCGGUcaGCUGCaCGgCCAUcugGUUUAUGc -3'
miRNA:   3'- cUGGCCA--CGAUG-GUgGGUA---UAAAUAU- -5'
11376 3' -49.1 NC_003084.1 + 9287 0.66 0.990381
Target:  5'- aGCCGGUgGCguuaaagGCCGCCCAa------- -3'
miRNA:   3'- cUGGCCA-CGa------UGGUGGGUauaaauau -5'
11376 3' -49.1 NC_003084.1 + 54944 0.67 0.985593
Target:  5'- cGGCCGGUGCggucauacauUugCGCCCGgacgGUgaggUGUGc -3'
miRNA:   3'- -CUGGCCACG----------AugGUGGGUa---UAa---AUAU- -5'
11376 3' -49.1 NC_003084.1 + 11793 0.67 0.983647
Target:  5'- gGACCaGUGCUAUCAUCCGg------- -3'
miRNA:   3'- -CUGGcCACGAUGGUGGGUauaaauau -5'
11376 3' -49.1 NC_003084.1 + 51437 0.67 0.981508
Target:  5'- gGACCGGUGCUGCgCAauuuaCCGUu------ -3'
miRNA:   3'- -CUGGCCACGAUG-GUg----GGUAuaaauau -5'
11376 3' -49.1 NC_003084.1 + 28359 0.68 0.967575
Target:  5'- uAUCGGUGU--CCACCCAUAUg---- -3'
miRNA:   3'- cUGGCCACGauGGUGGGUAUAaauau -5'
11376 3' -49.1 NC_003084.1 + 99101 0.68 0.967575
Target:  5'- uGACCGGUGUUAgCACUC-UGUUcgAUAu -3'
miRNA:   3'- -CUGGCCACGAUgGUGGGuAUAAa-UAU- -5'
11376 3' -49.1 NC_003084.1 + 94493 0.68 0.964077
Target:  5'- -uCCGGUGUUGCCGCCgGUu------ -3'
miRNA:   3'- cuGGCCACGAUGGUGGgUAuaaauau -5'
11376 3' -49.1 NC_003084.1 + 48077 0.7 0.937514
Target:  5'- gGAgUGGUGCUACCAC-CGUGUUc--- -3'
miRNA:   3'- -CUgGCCACGAUGGUGgGUAUAAauau -5'
11376 3' -49.1 NC_003084.1 + 54141 0.7 0.937514
Target:  5'- gGACCGGUGCUGCUGCUg--------- -3'
miRNA:   3'- -CUGGCCACGAUGGUGGguauaaauau -5'
11376 3' -49.1 NC_003084.1 + 22390 0.7 0.920469
Target:  5'- gGGCCGGUGCcACCGgCCAgagUUGa- -3'
miRNA:   3'- -CUGGCCACGaUGGUgGGUauaAAUau -5'
11376 3' -49.1 NC_003084.1 + 34558 0.78 0.572318
Target:  5'- cGACUGGUGCUACCACCUu-------- -3'
miRNA:   3'- -CUGGCCACGAUGGUGGGuauaaauau -5'
11376 3' -49.1 NC_003084.1 + 53121 0.86 0.223072
Target:  5'- cGACCGGUGCUACCACC---AUUUAUAg -3'
miRNA:   3'- -CUGGCCACGAUGGUGGguaUAAAUAU- -5'
11376 3' -49.1 NC_003084.1 + 54947 1.08 0.008931
Target:  5'- cGACCGGUGCUACCACCCAUAUUUAUAg -3'
miRNA:   3'- -CUGGCCACGAUGGUGGGUAUAAAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.