miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11377 3' -62.4 NC_003084.1 + 103669 0.66 0.575174
Target:  5'- ----cUGGGCCuGCCuGCUGCuGCCCg -3'
miRNA:   3'- gggcaACUCGGuCGG-CGGCGuCGGGg -5'
11377 3' -62.4 NC_003084.1 + 29655 0.66 0.575174
Target:  5'- aUuuGUUccacGAGCgCAGCCcgaaCCGCAGCCaCUg -3'
miRNA:   3'- -GggCAA----CUCG-GUCGGc---GGCGUCGG-GG- -5'
11377 3' -62.4 NC_003084.1 + 53966 0.66 0.575174
Target:  5'- gUCUGaUUGAGCaaAGUCGCCGUgaucaaagGGCCCg -3'
miRNA:   3'- -GGGC-AACUCGg-UCGGCGGCG--------UCGGGg -5'
11377 3' -62.4 NC_003084.1 + 31343 0.66 0.555521
Target:  5'- aUCCGcUGAGUgaggAGCCGauaaaCUGCAGCCCg -3'
miRNA:   3'- -GGGCaACUCGg---UCGGC-----GGCGUCGGGg -5'
11377 3' -62.4 NC_003084.1 + 22416 0.66 0.545767
Target:  5'- aCCGUuacgGAGCCccGCUcgauggaggGCCGguGCCaCCg -3'
miRNA:   3'- gGGCAa---CUCGGu-CGG---------CGGCguCGG-GG- -5'
11377 3' -62.4 NC_003084.1 + 86924 0.66 0.526431
Target:  5'- gCCCGcauacguucagUG-GCCAaaguuuGCCGCUGCAGCUgCa -3'
miRNA:   3'- -GGGCa----------ACuCGGU------CGGCGGCGUCGGgG- -5'
11377 3' -62.4 NC_003084.1 + 98715 0.66 0.525471
Target:  5'- -gCGUUGGGCCauGGCCGCUuuggaucucgcaaGCGGUacaCCa -3'
miRNA:   3'- ggGCAACUCGG--UCGGCGG-------------CGUCGg--GG- -5'
11377 3' -62.4 NC_003084.1 + 77226 0.67 0.507358
Target:  5'- uUuuGUUGgggaAGCCAGCa-CgGCGGCCCUu -3'
miRNA:   3'- -GggCAAC----UCGGUCGgcGgCGUCGGGG- -5'
11377 3' -62.4 NC_003084.1 + 44970 0.67 0.479321
Target:  5'- aCCGgagGAGCguaaGGUCGCUGUcaagcGCCCCa -3'
miRNA:   3'- gGGCaa-CUCGg---UCGGCGGCGu----CGGGG- -5'
11377 3' -62.4 NC_003084.1 + 91863 0.68 0.452064
Target:  5'- aCCCGUgUGAaaGCCGauucugcugcuGCUGCUGCGGCUgCa -3'
miRNA:   3'- -GGGCA-ACU--CGGU-----------CGGCGGCGUCGGgG- -5'
11377 3' -62.4 NC_003084.1 + 75399 0.68 0.408602
Target:  5'- uUCGUUGcGCCGgcuaugaccguGCCGCgCGCAcGCUCCg -3'
miRNA:   3'- gGGCAACuCGGU-----------CGGCG-GCGU-CGGGG- -5'
11377 3' -62.4 NC_003084.1 + 59979 0.69 0.400227
Target:  5'- aCCGUUGAcaCCA-CCGCCGgAuacuGCCCCa -3'
miRNA:   3'- gGGCAACUc-GGUcGGCGGCgU----CGGGG- -5'
11377 3' -62.4 NC_003084.1 + 46028 0.69 0.387057
Target:  5'- uCCCGUUcaaaGuGCCgauguuccgucaacuAGCCaaCUGCAGCCCCg -3'
miRNA:   3'- -GGGCAA----CuCGG---------------UCGGc-GGCGUCGGGG- -5'
11377 3' -62.4 NC_003084.1 + 99724 0.69 0.375769
Target:  5'- uUgGUaGAGCuCGGCCGCgaGCAgaGCCCCa -3'
miRNA:   3'- gGgCAaCUCG-GUCGGCGg-CGU--CGGGG- -5'
11377 3' -62.4 NC_003084.1 + 55544 0.69 0.367845
Target:  5'- gCUGUUGAuCCGGCUGCUGCuGCUgCu -3'
miRNA:   3'- gGGCAACUcGGUCGGCGGCGuCGGgG- -5'
11377 3' -62.4 NC_003084.1 + 22561 0.7 0.337308
Target:  5'- uUCCaGUaGAGCCAGCUGaccCUGCAGUCCa -3'
miRNA:   3'- -GGG-CAaCUCGGUCGGC---GGCGUCGGGg -5'
11377 3' -62.4 NC_003084.1 + 38471 0.71 0.295047
Target:  5'- gCCGgguUGAGCCAaauguggauGCCGUCGUuGCCCg -3'
miRNA:   3'- gGGCa--ACUCGGU---------CGGCGGCGuCGGGg -5'
11377 3' -62.4 NC_003084.1 + 55312 1.13 0.000286
Target:  5'- cCCCGUUGAGCCAGCCGCCGCAGCCCCa -3'
miRNA:   3'- -GGGCAACUCGGUCGGCGGCGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.