Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11377 | 3' | -62.4 | NC_003084.1 | + | 22416 | 0.66 | 0.545767 |
Target: 5'- aCCGUuacgGAGCCccGCUcgauggaggGCCGguGCCaCCg -3' miRNA: 3'- gGGCAa---CUCGGu-CGG---------CGGCguCGG-GG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 44970 | 0.67 | 0.479321 |
Target: 5'- aCCGgagGAGCguaaGGUCGCUGUcaagcGCCCCa -3' miRNA: 3'- gGGCaa-CUCGg---UCGGCGGCGu----CGGGG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 91863 | 0.68 | 0.452064 |
Target: 5'- aCCCGUgUGAaaGCCGauucugcugcuGCUGCUGCGGCUgCa -3' miRNA: 3'- -GGGCA-ACU--CGGU-----------CGGCGGCGUCGGgG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 75399 | 0.68 | 0.408602 |
Target: 5'- uUCGUUGcGCCGgcuaugaccguGCCGCgCGCAcGCUCCg -3' miRNA: 3'- gGGCAACuCGGU-----------CGGCG-GCGU-CGGGG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 46028 | 0.69 | 0.387057 |
Target: 5'- uCCCGUUcaaaGuGCCgauguuccgucaacuAGCCaaCUGCAGCCCCg -3' miRNA: 3'- -GGGCAA----CuCGG---------------UCGGc-GGCGUCGGGG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 99724 | 0.69 | 0.375769 |
Target: 5'- uUgGUaGAGCuCGGCCGCgaGCAgaGCCCCa -3' miRNA: 3'- gGgCAaCUCG-GUCGGCGg-CGU--CGGGG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 55544 | 0.69 | 0.367845 |
Target: 5'- gCUGUUGAuCCGGCUGCUGCuGCUgCu -3' miRNA: 3'- gGGCAACUcGGUCGGCGGCGuCGGgG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 29655 | 0.66 | 0.575174 |
Target: 5'- aUuuGUUccacGAGCgCAGCCcgaaCCGCAGCCaCUg -3' miRNA: 3'- -GggCAA----CUCG-GUCGGc---GGCGUCGG-GG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 103669 | 0.66 | 0.575174 |
Target: 5'- ----cUGGGCCuGCCuGCUGCuGCCCg -3' miRNA: 3'- gggcaACUCGGuCGG-CGGCGuCGGGg -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 53966 | 0.66 | 0.575174 |
Target: 5'- gUCUGaUUGAGCaaAGUCGCCGUgaucaaagGGCCCg -3' miRNA: 3'- -GGGC-AACUCGg-UCGGCGGCG--------UCGGGg -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 31343 | 0.66 | 0.555521 |
Target: 5'- aUCCGcUGAGUgaggAGCCGauaaaCUGCAGCCCg -3' miRNA: 3'- -GGGCaACUCGg---UCGGC-----GGCGUCGGGg -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 86924 | 0.66 | 0.526431 |
Target: 5'- gCCCGcauacguucagUG-GCCAaaguuuGCCGCUGCAGCUgCa -3' miRNA: 3'- -GGGCa----------ACuCGGU------CGGCGGCGUCGGgG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 98715 | 0.66 | 0.525471 |
Target: 5'- -gCGUUGGGCCauGGCCGCUuuggaucucgcaaGCGGUacaCCa -3' miRNA: 3'- ggGCAACUCGG--UCGGCGG-------------CGUCGg--GG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 77226 | 0.67 | 0.507358 |
Target: 5'- uUuuGUUGgggaAGCCAGCa-CgGCGGCCCUu -3' miRNA: 3'- -GggCAAC----UCGGUCGgcGgCGUCGGGG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 59979 | 0.69 | 0.400227 |
Target: 5'- aCCGUUGAcaCCA-CCGCCGgAuacuGCCCCa -3' miRNA: 3'- gGGCAACUc-GGUcGGCGGCgU----CGGGG- -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 22561 | 0.7 | 0.337308 |
Target: 5'- uUCCaGUaGAGCCAGCUGaccCUGCAGUCCa -3' miRNA: 3'- -GGG-CAaCUCGGUCGGC---GGCGUCGGGg -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 38471 | 0.71 | 0.295047 |
Target: 5'- gCCGgguUGAGCCAaauguggauGCCGUCGUuGCCCg -3' miRNA: 3'- gGGCa--ACUCGGU---------CGGCGGCGuCGGGg -5' |
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11377 | 3' | -62.4 | NC_003084.1 | + | 55312 | 1.13 | 0.000286 |
Target: 5'- cCCCGUUGAGCCAGCCGCCGCAGCCCCa -3' miRNA: 3'- -GGGCAACUCGGUCGGCGGCGUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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