miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11378 5' -62.5 NC_003084.1 + 7065 0.66 0.507362
Target:  5'- --cUGGGCgcaccgUCAGCgCGGGCCUCGGCUu -3'
miRNA:   3'- auaGCUCG------GGUUGgGCCCGGGGUCGA- -5'
11378 5' -62.5 NC_003084.1 + 99489 0.66 0.497767
Target:  5'- uUGUUGAGCCCAGCCCGcucggacgaGGUCau-GCg -3'
miRNA:   3'- -AUAGCUCGGGUUGGGC---------CCGGgguCGa -5'
11378 5' -62.5 NC_003084.1 + 17484 0.66 0.488255
Target:  5'- -cUCGAGUUgAGCgCCGGGUCC-AGCUc -3'
miRNA:   3'- auAGCUCGGgUUG-GGCCCGGGgUCGA- -5'
11378 5' -62.5 NC_003084.1 + 103974 0.67 0.460252
Target:  5'- gGUgGAGCUCcACCCGGGCugCCCAa-- -3'
miRNA:   3'- aUAgCUCGGGuUGGGCCCG--GGGUcga -5'
11378 5' -62.5 NC_003084.1 + 13920 0.68 0.406948
Target:  5'- -uUCGAGCUUAGCCCGGacucGCUCgAGUa -3'
miRNA:   3'- auAGCUCGGGUUGGGCC----CGGGgUCGa -5'
11378 5' -62.5 NC_003084.1 + 7575 0.68 0.398446
Target:  5'- --cCGAGCCCGAUCCaaaGCCCgAGCc -3'
miRNA:   3'- auaGCUCGGGUUGGGcc-CGGGgUCGa -5'
11378 5' -62.5 NC_003084.1 + 45861 0.68 0.390059
Target:  5'- -cUUGGGCUgGACCCgGGGCUgCAGUUg -3'
miRNA:   3'- auAGCUCGGgUUGGG-CCCGGgGUCGA- -5'
11378 5' -62.5 NC_003084.1 + 89813 0.68 0.373634
Target:  5'- cAUCGAGCUCGuCuuGGcGCUCCGGUg -3'
miRNA:   3'- aUAGCUCGGGUuGggCC-CGGGGUCGa -5'
11378 5' -62.5 NC_003084.1 + 86973 0.68 0.3656
Target:  5'- cAUCGAGCaCCAucGgUUGGGCCgCCAGUg -3'
miRNA:   3'- aUAGCUCG-GGU--UgGGCCCGG-GGUCGa -5'
11378 5' -62.5 NC_003084.1 + 5876 0.68 0.3656
Target:  5'- -uUCuGGCUCGuaaauucaaaGCCCGGGCCCC-GCa -3'
miRNA:   3'- auAGcUCGGGU----------UGGGCCCGGGGuCGa -5'
11378 5' -62.5 NC_003084.1 + 59197 0.68 0.357686
Target:  5'- -uUCG-GCCaCAGCUgGGGCCCgGGUUg -3'
miRNA:   3'- auAGCuCGG-GUUGGgCCCGGGgUCGA- -5'
11378 5' -62.5 NC_003084.1 + 68290 0.69 0.34222
Target:  5'- gGUUuAGCCCAACUCGuGGCCgUGGCUc -3'
miRNA:   3'- aUAGcUCGGGUUGGGC-CCGGgGUCGA- -5'
11378 5' -62.5 NC_003084.1 + 104480 0.69 0.34222
Target:  5'- ---aGAGCCCAGCCCguGGGCCaaCUGGUg -3'
miRNA:   3'- auagCUCGGGUUGGG--CCCGG--GGUCGa -5'
11378 5' -62.5 NC_003084.1 + 31932 0.69 0.34222
Target:  5'- gAUCGuuGCCCGACCCGGcGCUacaacgCAGCc -3'
miRNA:   3'- aUAGCu-CGGGUUGGGCC-CGGg-----GUCGa -5'
11378 5' -62.5 NC_003084.1 + 46245 0.69 0.334671
Target:  5'- aAUUGAGCCCAgcuagACUCGcGGUCCUGGUUg -3'
miRNA:   3'- aUAGCUCGGGU-----UGGGC-CCGGGGUCGA- -5'
11378 5' -62.5 NC_003084.1 + 106115 0.69 0.312758
Target:  5'- gUGUCGGGUugCCAACCguCGGGuagcugaaCCCCAGCUc -3'
miRNA:   3'- -AUAGCUCG--GGUUGG--GCCC--------GGGGUCGA- -5'
11378 5' -62.5 NC_003084.1 + 72510 0.73 0.171403
Target:  5'- ---aGAGCCCGacgaaauguugGCCCGGGucgacaaagucCCCCAGCUg -3'
miRNA:   3'- auagCUCGGGU-----------UGGGCCC-----------GGGGUCGA- -5'
11378 5' -62.5 NC_003084.1 + 5608 0.77 0.102565
Target:  5'- -cUUGAGCUCAGCCCucgucaGGGCCaCCAGCUc -3'
miRNA:   3'- auAGCUCGGGUUGGG------CCCGG-GGUCGA- -5'
11378 5' -62.5 NC_003084.1 + 59054 1.06 0.000709
Target:  5'- gUAUCGAGCCCAACCCGGGCCCCAGCUg -3'
miRNA:   3'- -AUAGCUCGGGUUGGGCCCGGGGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.