Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11382 | 3' | -54 | NC_003084.1 | + | 48226 | 0.66 | 0.927224 |
Target: 5'- cGCUCGaguacgaGUUCAUGAAGCCGc--ACGa -3' miRNA: 3'- aCGAGUg------CAGGUGCUUCGGCacaUGC- -5' |
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11382 | 3' | -54 | NC_003084.1 | + | 99904 | 0.66 | 0.927224 |
Target: 5'- cGCUCACauuuaCUGCGuuGAGCCGgGUACGu -3' miRNA: 3'- aCGAGUGca---GGUGC--UUCGGCaCAUGC- -5' |
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11382 | 3' | -54 | NC_003084.1 | + | 59721 | 0.67 | 0.88986 |
Target: 5'- aGCUCGUGUCCACcgaGGAGUCGUcccUGCGc -3' miRNA: 3'- aCGAGUGCAGGUG---CUUCGGCAc--AUGC- -5' |
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11382 | 3' | -54 | NC_003084.1 | + | 34043 | 0.67 | 0.88986 |
Target: 5'- aGUUCACG-CCGCucgGAAaCCGUGUugGc -3' miRNA: 3'- aCGAGUGCaGGUG---CUUcGGCACAugC- -5' |
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11382 | 3' | -54 | NC_003084.1 | + | 69795 | 0.68 | 0.860102 |
Target: 5'- aGCUCua-UCCAauCGggGCCGaauUGUACGa -3' miRNA: 3'- aCGAGugcAGGU--GCuuCGGC---ACAUGC- -5' |
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11382 | 3' | -54 | NC_003084.1 | + | 50710 | 0.68 | 0.852101 |
Target: 5'- cUGgaCACGUaCCGUGAAGCUGUGgcCGa -3' miRNA: 3'- -ACgaGUGCA-GGUGCUUCGGCACauGC- -5' |
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11382 | 3' | -54 | NC_003084.1 | + | 93050 | 0.69 | 0.818049 |
Target: 5'- cUGCUCAUGUCCu-----CCGUGUugGg -3' miRNA: 3'- -ACGAGUGCAGGugcuucGGCACAugC- -5' |
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11382 | 3' | -54 | NC_003084.1 | + | 40396 | 0.7 | 0.751917 |
Target: 5'- uUGCUCGacuCGUCCACucuAGCCGUGa--- -3' miRNA: 3'- -ACGAGU---GCAGGUGcu-UCGGCACaugc -5' |
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11382 | 3' | -54 | NC_003084.1 | + | 53101 | 0.72 | 0.617124 |
Target: 5'- aGUUCugGaCCGCGAuAGCCGUGauaUGCGu -3' miRNA: 3'- aCGAGugCaGGUGCU-UCGGCAC---AUGC- -5' |
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11382 | 3' | -54 | NC_003084.1 | + | 64326 | 1.1 | 0.002754 |
Target: 5'- uUGCUCACGUCCACGAAGCCGUGUACGg -3' miRNA: 3'- -ACGAGUGCAGGUGCUUCGGCACAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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