miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11383 3' -52.8 NC_003084.1 + 99458 0.66 0.953153
Target:  5'- --uCCGAACuUGGCCAaCGCgagaACCGAGc -3'
miRNA:   3'- aguGGCUUG-ACCGGUaGCG----UGGUUUc -5'
11383 3' -52.8 NC_003084.1 + 27371 0.66 0.948844
Target:  5'- gCACCGcaAACUGGUCGUugaaCGCAgUGAAGc -3'
miRNA:   3'- aGUGGC--UUGACCGGUA----GCGUgGUUUC- -5'
11383 3' -52.8 NC_003084.1 + 10017 0.66 0.948844
Target:  5'- cUACCGGA-UGGUgc-CGCACCAAAGu -3'
miRNA:   3'- aGUGGCUUgACCGguaGCGUGGUUUC- -5'
11383 3' -52.8 NC_003084.1 + 44030 0.66 0.948844
Target:  5'- -aGCCGcGCUGGUCAUCaaugcgGCGCUcGAGu -3'
miRNA:   3'- agUGGCuUGACCGGUAG------CGUGGuUUC- -5'
11383 3' -52.8 NC_003084.1 + 25146 0.66 0.947502
Target:  5'- aCACCGuucggugcacauccAACcGGCaCAUCGCAgucuccCCAAAGg -3'
miRNA:   3'- aGUGGC--------------UUGaCCG-GUAGCGU------GGUUUC- -5'
11383 3' -52.8 NC_003084.1 + 60672 0.66 0.94428
Target:  5'- gUCACCacuGCUGGCCGgagugaacaucCGUACCAc-- -3'
miRNA:   3'- -AGUGGcu-UGACCGGUa----------GCGUGGUuuc -5'
11383 3' -52.8 NC_003084.1 + 19516 0.66 0.939458
Target:  5'- cUCACauaaCGAAuCUGGCCAaUGUACCGcGGa -3'
miRNA:   3'- -AGUG----GCUU-GACCGGUaGCGUGGUuUC- -5'
11383 3' -52.8 NC_003084.1 + 73796 0.66 0.939458
Target:  5'- uUCACCcuuCUGGCaGUCGUugCGAAu -3'
miRNA:   3'- -AGUGGcuuGACCGgUAGCGugGUUUc -5'
11383 3' -52.8 NC_003084.1 + 43467 0.66 0.939458
Target:  5'- -uGCCGcAUUGGCCAcCGcCGCCAccAAGu -3'
miRNA:   3'- agUGGCuUGACCGGUaGC-GUGGU--UUC- -5'
11383 3' -52.8 NC_003084.1 + 29694 0.66 0.939458
Target:  5'- cCACCGGuuuACUGuaGCCAUC-CACgCGAAGu -3'
miRNA:   3'- aGUGGCU---UGAC--CGGUAGcGUG-GUUUC- -5'
11383 3' -52.8 NC_003084.1 + 2466 0.66 0.934375
Target:  5'- uUC-CgCGAGCUGGCCAU-GCACUu--- -3'
miRNA:   3'- -AGuG-GCUUGACCGGUAgCGUGGuuuc -5'
11383 3' -52.8 NC_003084.1 + 68794 0.67 0.92903
Target:  5'- aCACUGggUgGGCacgaGUCGgGCUAGAGg -3'
miRNA:   3'- aGUGGCuuGaCCGg---UAGCgUGGUUUC- -5'
11383 3' -52.8 NC_003084.1 + 43000 0.67 0.923422
Target:  5'- -aGCCGGGCUaaGGCCcgCGgACCGc-- -3'
miRNA:   3'- agUGGCUUGA--CCGGuaGCgUGGUuuc -5'
11383 3' -52.8 NC_003084.1 + 46377 0.67 0.905028
Target:  5'- cCAUCGcGCuUGGCCucUCGUACCAGu- -3'
miRNA:   3'- aGUGGCuUG-ACCGGu-AGCGUGGUUuc -5'
11383 3' -52.8 NC_003084.1 + 77358 0.68 0.858193
Target:  5'- cCGCCGuGCUGGCUuccccaacaaaaCGCACCAGu- -3'
miRNA:   3'- aGUGGCuUGACCGGua----------GCGUGGUUuc -5'
11383 3' -52.8 NC_003084.1 + 9474 0.69 0.844984
Target:  5'- -uGCCGAGCUGGg---CGCACCGGu- -3'
miRNA:   3'- agUGGCUUGACCgguaGCGUGGUUuc -5'
11383 3' -52.8 NC_003084.1 + 97079 0.69 0.827712
Target:  5'- -gGCCGAGCUGGCCGauuUgGUgaugGCCGAGc -3'
miRNA:   3'- agUGGCUUGACCGGU---AgCG----UGGUUUc -5'
11383 3' -52.8 NC_003084.1 + 26522 0.69 0.818778
Target:  5'- gCAgCGaAAUUGG-CAUCGCACCAAAu -3'
miRNA:   3'- aGUgGC-UUGACCgGUAGCGUGGUUUc -5'
11383 3' -52.8 NC_003084.1 + 57428 0.7 0.781275
Target:  5'- gCGCCGAACUGugcuucGCCAuUCGUGCCGu-- -3'
miRNA:   3'- aGUGGCUUGAC------CGGU-AGCGUGGUuuc -5'
11383 3' -52.8 NC_003084.1 + 74491 0.71 0.720825
Target:  5'- aCACgGAGCUGGCCAagaacaacuUUGCguuGCCAAAu -3'
miRNA:   3'- aGUGgCUUGACCGGU---------AGCG---UGGUUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.