Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11383 | 5' | -58.7 | NC_003084.1 | + | 15639 | 0.66 | 0.676351 |
|
Target: 5'- -gCGgUGGAGCuguacaccaaaauGCCGGaCGuGCUGCGCg -3' miRNA: 3'- aaGCgAUCUCG-------------CGGCCaGU-CGACGUG- -5' |
|||||||
| 11383 | 5' | -58.7 | NC_003084.1 | + | 96462 | 0.66 | 0.64594 |
|
Target: 5'- cUCGCacaucUGCCGGUCGGCcuugUGCACg -3' miRNA: 3'- aAGCGaucucGCGGCCAGUCG----ACGUG- -5' |
|||||||
| 11383 | 5' | -58.7 | NC_003084.1 | + | 43818 | 0.67 | 0.614378 |
|
Target: 5'- -cCGuCUGGAugGUG-CGGUCuAGCUGCACa -3' miRNA: 3'- aaGC-GAUCU--CGCgGCCAG-UCGACGUG- -5' |
|||||||
| 11383 | 5' | -58.7 | NC_003084.1 | + | 107173 | 0.69 | 0.452795 |
|
Target: 5'- -gCGCUGuacGAGCGCaCGGUCgaggauGGCUGuCGCg -3' miRNA: 3'- aaGCGAU---CUCGCG-GCCAG------UCGAC-GUG- -5' |
|||||||
| 11383 | 5' | -58.7 | NC_003084.1 | + | 100353 | 0.77 | 0.161565 |
|
Target: 5'- -gCGUUAGGGCGCUGGagCGGCUGCGu -3' miRNA: 3'- aaGCGAUCUCGCGGCCa-GUCGACGUg -5' |
|||||||
| 11383 | 5' | -58.7 | NC_003084.1 | + | 65177 | 1.07 | 0.001052 |
|
Target: 5'- cUUCGCUAGAGCGCCGGUCAGCUGCACg -3' miRNA: 3'- -AAGCGAUCUCGCGGCCAGUCGACGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home