Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11385 | 3' | -50.7 | NC_003084.1 | + | 94931 | 0.67 | 0.969211 |
Target: 5'- aGCCC-CaCGAGGgccACCACCGGAUc-- -3' miRNA: 3'- aCGGGuG-GCUUUa--UGGUGGCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 62121 | 0.67 | 0.965929 |
Target: 5'- gGCCgACuccugcuaCGAAAUACCACgCGAGCu-- -3' miRNA: 3'- aCGGgUG--------GCUUUAUGGUG-GCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 93550 | 0.67 | 0.962408 |
Target: 5'- cGCaCCAUCG-AGUGCCACuCGggUAc- -3' miRNA: 3'- aCG-GGUGGCuUUAUGGUG-GCuuGUuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 89676 | 0.67 | 0.962408 |
Target: 5'- cGUUCACCGGAGcGCCAagaCGAGCu-- -3' miRNA: 3'- aCGGGUGGCUUUaUGGUg--GCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 6052 | 0.67 | 0.962408 |
Target: 5'- uUGUCC-CCGAGGUGCCcagcugcaaGCUGAACu-- -3' miRNA: 3'- -ACGGGuGGCUUUAUGG---------UGGCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 60679 | 0.67 | 0.972261 |
Target: 5'- cUGCUgGCCGGAgugaacauccGUACCACCucGCGGc -3' miRNA: 3'- -ACGGgUGGCUU----------UAUGGUGGcuUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 88690 | 0.66 | 0.986156 |
Target: 5'- gGCCCcaaaaagaugACCGAugaccaacuGGUGCCGCUGAAgcccauCAAGa -3' miRNA: 3'- aCGGG----------UGGCU---------UUAUGGUGGCUU------GUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 31674 | 0.66 | 0.977697 |
Target: 5'- gGCCCAacCCGAGGUAUauguggaucCCGAguGCGAGg -3' miRNA: 3'- aCGGGU--GGCUUUAUGgu-------GGCU--UGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 34670 | 0.66 | 0.976679 |
Target: 5'- cGCCCAUCGGAuccacaguucgucUACCguguagagucGCUGGACGAGu -3' miRNA: 3'- aCGGGUGGCUUu------------AUGG----------UGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 3553 | 0.66 | 0.977697 |
Target: 5'- gUGCCCACUuGAAccaCACCGAACc-- -3' miRNA: 3'- -ACGGGUGGcUUUaugGUGGCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 2290 | 0.66 | 0.977697 |
Target: 5'- aGCUgUACaCGAuGGUAcCCACCGAACGGGa -3' miRNA: 3'- aCGG-GUG-GCU-UUAU-GGUGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 47349 | 0.66 | 0.9801 |
Target: 5'- gGCUCACCauGAUGCCAC--AACAAGu -3' miRNA: 3'- aCGGGUGGcuUUAUGGUGgcUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 47263 | 0.66 | 0.984127 |
Target: 5'- cGUgCCACUGGAGccauuacUGCaCGCCGAACAGu -3' miRNA: 3'- aCG-GGUGGCUUU-------AUG-GUGGCUUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 23730 | 0.66 | 0.98432 |
Target: 5'- cGCCCACCGAGAUca-AUUGGGCc-- -3' miRNA: 3'- aCGGGUGGCUUUAuggUGGCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 53918 | 0.66 | 0.986156 |
Target: 5'- -cUUCACCGGAGUAUUACgacuCGGACGAGa -3' miRNA: 3'- acGGGUGGCUUUAUGGUG----GCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 27136 | 0.66 | 0.986156 |
Target: 5'- cGCaCCAUCGAAcgguuUGCCGguuauggguUCGAACAAGu -3' miRNA: 3'- aCG-GGUGGCUUu----AUGGU---------GGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 106307 | 0.66 | 0.9801 |
Target: 5'- gUGUCCACCGAGA-ACCGCaucaaauggcgUGAacuauACAAGg -3' miRNA: 3'- -ACGGGUGGCUUUaUGGUG-----------GCU-----UGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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