Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11385 | 3' | -50.7 | NC_003084.1 | + | 90394 | 0.68 | 0.94102 |
Target: 5'- gGUCCACCGuuAcACCGCUGGugGGc -3' miRNA: 3'- aCGGGUGGCuuUaUGGUGGCUugUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 90832 | 0.72 | 0.819729 |
Target: 5'- cGCCCACCGuugguGUGuaACCGAACGc- -3' miRNA: 3'- aCGGGUGGCuu---UAUggUGGCUUGUuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 91579 | 0.69 | 0.912383 |
Target: 5'- aGCuUCGCCGGAAUaugcugaACCACCGGugguccgcuccuGCGAGg -3' miRNA: 3'- aCG-GGUGGCUUUA-------UGGUGGCU------------UGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 93550 | 0.67 | 0.962408 |
Target: 5'- cGCaCCAUCG-AGUGCCACuCGggUAc- -3' miRNA: 3'- aCG-GGUGGCuUUAUGGUG-GCuuGUuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 94919 | 0.67 | 0.96727 |
Target: 5'- uUGCUCACCGAAAgUGCCAagcuguacugcaccuUCGAcuCGAGg -3' miRNA: 3'- -ACGGGUGGCUUU-AUGGU---------------GGCUu-GUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 94931 | 0.67 | 0.969211 |
Target: 5'- aGCCC-CaCGAGGgccACCACCGGAUc-- -3' miRNA: 3'- aCGGGuG-GCUUUa--UGGUGGCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 96077 | 0.72 | 0.801115 |
Target: 5'- gGUCCGCCucGAAcGCCACCGAAUAAu -3' miRNA: 3'- aCGGGUGGc-UUUaUGGUGGCUUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 97084 | 0.71 | 0.870677 |
Target: 5'- aGCUgGCCGAuuuggugAUgGCCGAGCAGGu -3' miRNA: 3'- aCGGgUGGCUuua----UGgUGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 98649 | 0.69 | 0.919151 |
Target: 5'- -aCCUGCCGGAG-ACC-CUGAGCAAGa -3' miRNA: 3'- acGGGUGGCUUUaUGGuGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 100907 | 0.68 | 0.945818 |
Target: 5'- cGCCC-CCaAGAgccCCACCGGugGAGu -3' miRNA: 3'- aCGGGuGGcUUUau-GGUGGCUugUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 101743 | 0.67 | 0.975087 |
Target: 5'- aGCcaaCCACCGuucauuuUACCACCaAACGAGc -3' miRNA: 3'- aCG---GGUGGCuuu----AUGGUGGcUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 101786 | 0.68 | 0.960178 |
Target: 5'- aGCCaCGCCGAAaacuucguuuagcaaAcUGCCACCGAcCGAu -3' miRNA: 3'- aCGG-GUGGCUU---------------U-AUGGUGGCUuGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 102878 | 0.73 | 0.731097 |
Target: 5'- gUGCUCACauugguCGGAAUACCGCUGuACAAGu -3' miRNA: 3'- -ACGGGUG------GCUUUAUGGUGGCuUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 103847 | 0.67 | 0.972261 |
Target: 5'- aGCCCgGgUGGAGcuCCACCGAGCGGu -3' miRNA: 3'- aCGGG-UgGCUUUauGGUGGCUUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 103921 | 0.68 | 0.945818 |
Target: 5'- gGCCCGCCauaGAGAuauacacggguUACCACCG-GCGGa -3' miRNA: 3'- aCGGGUGG---CUUU-----------AUGGUGGCuUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 106307 | 0.66 | 0.9801 |
Target: 5'- gUGUCCACCGAGA-ACCGCaucaaauggcgUGAacuauACAAGg -3' miRNA: 3'- -ACGGGUGGCUUUaUGGUG-----------GCU-----UGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 107224 | 0.75 | 0.634633 |
Target: 5'- aGUCCACCGcAGAUugCACCGGAgcuacccgaaccCAAGg -3' miRNA: 3'- aCGGGUGGC-UUUAugGUGGCUU------------GUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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