miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11385 3' -50.7 NC_003084.1 + 85388 0.72 0.791544
Target:  5'- cGCUguCCGAGAUgggGCUGCCGAGCAc- -3'
miRNA:   3'- aCGGguGGCUUUA---UGGUGGCUUGUuc -5'
11385 3' -50.7 NC_003084.1 + 79217 0.68 0.945818
Target:  5'- gUGcCCCGCCGGugcuAUAUCGCCaAACGAu -3'
miRNA:   3'- -AC-GGGUGGCUu---UAUGGUGGcUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 77902 0.69 0.919151
Target:  5'- gUGCCCuccuCCGAugugugGCCACCGGucaugAUGAGg -3'
miRNA:   3'- -ACGGGu---GGCUuua---UGGUGGCU-----UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 72153 0.68 0.94102
Target:  5'- aGCgUACCGAAccACCGCCGcuuGCGAc -3'
miRNA:   3'- aCGgGUGGCUUuaUGGUGGCu--UGUUc -5'
11385 3' -50.7 NC_003084.1 + 68673 0.69 0.930624
Target:  5'- gUGCCCACCcaguGUuagcACCACCG-ACAAc -3'
miRNA:   3'- -ACGGGUGGcuu-UA----UGGUGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 67614 1.1 0.00539
Target:  5'- uUGCCCACCGAAAUACCACCGAACAAGa -3'
miRNA:   3'- -ACGGGUGGCUUUAUGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 66742 0.69 0.935956
Target:  5'- gGCCCGCaUGAuguUGCCGCCuGGAUAAu -3'
miRNA:   3'- aCGGGUG-GCUuu-AUGGUGG-CUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 63040 0.69 0.919151
Target:  5'- cGCCgGCUGGGAUccGCCACUuuuACAAGg -3'
miRNA:   3'- aCGGgUGGCUUUA--UGGUGGcu-UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 62121 0.67 0.965929
Target:  5'- gGCCgACuccugcuaCGAAAUACCACgCGAGCu-- -3'
miRNA:   3'- aCGGgUG--------GCUUUAUGGUG-GCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 61004 0.68 0.958642
Target:  5'- aGCaCCACCGAAcgACCGCUuguACcAGg -3'
miRNA:   3'- aCG-GGUGGCUUuaUGGUGGcu-UGuUC- -5'
11385 3' -50.7 NC_003084.1 + 60679 0.67 0.972261
Target:  5'- cUGCUgGCCGGAgugaacauccGUACCACCucGCGGc -3'
miRNA:   3'- -ACGGgUGGCUU----------UAUGGUGGcuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 55679 0.67 0.975087
Target:  5'- gGCCC-CCGu----CCACCGAaACAAa -3'
miRNA:   3'- aCGGGuGGCuuuauGGUGGCU-UGUUc -5'
11385 3' -50.7 NC_003084.1 + 53918 0.66 0.986156
Target:  5'- -cUUCACCGGAGUAUUACgacuCGGACGAGa -3'
miRNA:   3'- acGGGUGGCUUUAUGGUG----GCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 53432 0.81 0.331724
Target:  5'- gUGUCCaACCGAGAgcgcaacucgGCCGCCGGACAAGc -3'
miRNA:   3'- -ACGGG-UGGCUUUa---------UGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 47349 0.66 0.9801
Target:  5'- gGCUCACCauGAUGCCAC--AACAAGu -3'
miRNA:   3'- aCGGGUGGcuUUAUGGUGgcUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 47263 0.66 0.984127
Target:  5'- cGUgCCACUGGAGccauuacUGCaCGCCGAACAGu -3'
miRNA:   3'- aCG-GGUGGCUUU-------AUG-GUGGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 46316 0.73 0.771928
Target:  5'- cGCCCACCGGuGGUugUACCGAu---- -3'
miRNA:   3'- aCGGGUGGCU-UUAugGUGGCUuguuc -5'
11385 3' -50.7 NC_003084.1 + 40614 0.67 0.975087
Target:  5'- cGCCgACCG-GGUGCCuucUCGGACAGu -3'
miRNA:   3'- aCGGgUGGCuUUAUGGu--GGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 36728 0.67 0.972261
Target:  5'- gUGCCCAUCGAuugGCCucaGCUGuGCGAa -3'
miRNA:   3'- -ACGGGUGGCUuuaUGG---UGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 34670 0.66 0.976679
Target:  5'- cGCCCAUCGGAuccacaguucgucUACCguguagagucGCUGGACGAGu -3'
miRNA:   3'- aCGGGUGGCUUu------------AUGG----------UGGCUUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.