Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11385 | 3' | -50.7 | NC_003084.1 | + | 33339 | 0.68 | 0.94102 |
Target: 5'- cGCCCAUCacacggGCCACCGucGACAAa -3' miRNA: 3'- aCGGGUGGcuuua-UGGUGGC--UUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 31820 | 0.7 | 0.878367 |
Target: 5'- aGCCCGCgGugGUGCCaACCGAguccgGCAAc -3' miRNA: 3'- aCGGGUGgCuuUAUGG-UGGCU-----UGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 31674 | 0.66 | 0.977697 |
Target: 5'- gGCCCAacCCGAGGUAUauguggaucCCGAguGCGAGg -3' miRNA: 3'- aCGGGU--GGCUUUAUGgu-------GGCU--UGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 27136 | 0.66 | 0.986156 |
Target: 5'- cGCaCCAUCGAAcgguuUGCCGguuauggguUCGAACAAGu -3' miRNA: 3'- aCG-GGUGGCUUu----AUGGU---------GGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 25394 | 0.73 | 0.76593 |
Target: 5'- gGUCCACCGAgcacgggucccggacGcauAUAUCGCCGAACAAa -3' miRNA: 3'- aCGGGUGGCU---------------U---UAUGGUGGCUUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 25319 | 0.67 | 0.962408 |
Target: 5'- gGCUaACCGguAUaaaGCCGuCCGAGCAGGg -3' miRNA: 3'- aCGGgUGGCuuUA---UGGU-GGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 23730 | 0.66 | 0.98432 |
Target: 5'- cGCCCACCGAGAUca-AUUGGGCc-- -3' miRNA: 3'- aCGGGUGGCUUUAuggUGGCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 22406 | 0.67 | 0.962043 |
Target: 5'- aGCCCcgcucgauggaggGCCGG--UGCCACCGGcCAGa -3' miRNA: 3'- aCGGG-------------UGGCUuuAUGGUGGCUuGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 22265 | 0.69 | 0.930624 |
Target: 5'- gGCCgguggCACCGGcccuCCAUCGAGCGGGg -3' miRNA: 3'- aCGG-----GUGGCUuuauGGUGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 17684 | 0.67 | 0.976157 |
Target: 5'- cGCUCGCCGucugcuucucauUACCACCGAcCGu- -3' miRNA: 3'- aCGGGUGGCuuu---------AUGGUGGCUuGUuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 17624 | 0.7 | 0.878367 |
Target: 5'- cGCUCACCGAcaggGCCGCCaacuCGAGg -3' miRNA: 3'- aCGGGUGGCUuua-UGGUGGcuu-GUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 9848 | 0.67 | 0.975087 |
Target: 5'- cGCCC-UCGggGccACCACCG-ACAAc -3' miRNA: 3'- aCGGGuGGCuuUa-UGGUGGCuUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 9743 | 0.67 | 0.972261 |
Target: 5'- cGUCCACCuug--GCCGCCGAcuCGGGc -3' miRNA: 3'- aCGGGUGGcuuuaUGGUGGCUu-GUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 6393 | 0.73 | 0.76593 |
Target: 5'- gGCCCGugcCCGAGGUgagcugcaaauuggcACCAUUGGACAGGg -3' miRNA: 3'- aCGGGU---GGCUUUA---------------UGGUGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 6052 | 0.67 | 0.962408 |
Target: 5'- uUGUCC-CCGAGGUGCCcagcugcaaGCUGAACu-- -3' miRNA: 3'- -ACGGGuGGCUUUAUGG---------UGGCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 3553 | 0.66 | 0.977697 |
Target: 5'- gUGCCCACUuGAAccaCACCGAACc-- -3' miRNA: 3'- -ACGGGUGGcUUUaugGUGGCUUGuuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 2290 | 0.66 | 0.977697 |
Target: 5'- aGCUgUACaCGAuGGUAcCCACCGAACGGGa -3' miRNA: 3'- aCGG-GUG-GCU-UUAU-GGUGGCUUGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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