miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11385 3' -50.7 NC_003084.1 + 67614 1.1 0.00539
Target:  5'- uUGCCCACCGAAAUACCACCGAACAAGa -3'
miRNA:   3'- -ACGGGUGGCUUUAUGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 53432 0.81 0.331724
Target:  5'- gUGUCCaACCGAGAgcgcaacucgGCCGCCGGACAAGc -3'
miRNA:   3'- -ACGGG-UGGCUUUa---------UGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 107224 0.75 0.634633
Target:  5'- aGUCCACCGcAGAUugCACCGGAgcuacccgaaccCAAGg -3'
miRNA:   3'- aCGGGUGGC-UUUAugGUGGCUU------------GUUC- -5'
11385 3' -50.7 NC_003084.1 + 102878 0.73 0.731097
Target:  5'- gUGCUCACauugguCGGAAUACCGCUGuACAAGu -3'
miRNA:   3'- -ACGGGUG------GCUUUAUGGUGGCuUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 6393 0.73 0.76593
Target:  5'- gGCCCGugcCCGAGGUgagcugcaaauuggcACCAUUGGACAGGg -3'
miRNA:   3'- aCGGGU---GGCUUUA---------------UGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 25394 0.73 0.76593
Target:  5'- gGUCCACCGAgcacgggucccggacGcauAUAUCGCCGAACAAa -3'
miRNA:   3'- aCGGGUGGCU---------------U---UAUGGUGGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 46316 0.73 0.771928
Target:  5'- cGCCCACCGGuGGUugUACCGAu---- -3'
miRNA:   3'- aCGGGUGGCU-UUAugGUGGCUuguuc -5'
11385 3' -50.7 NC_003084.1 + 85388 0.72 0.791544
Target:  5'- cGCUguCCGAGAUgggGCUGCCGAGCAc- -3'
miRNA:   3'- aCGGguGGCUUUA---UGGUGGCUUGUuc -5'
11385 3' -50.7 NC_003084.1 + 96077 0.72 0.801115
Target:  5'- gGUCCGCCucGAAcGCCACCGAAUAAu -3'
miRNA:   3'- aCGGGUGGc-UUUaUGGUGGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 90832 0.72 0.819729
Target:  5'- cGCCCACCGuugguGUGuaACCGAACGc- -3'
miRNA:   3'- aCGGGUGGCuu---UAUggUGGCUUGUuc -5'
11385 3' -50.7 NC_003084.1 + 89372 0.71 0.85458
Target:  5'- aGCUgguuuCGCCGggGUGCCACuugCGGGCAAa -3'
miRNA:   3'- aCGG-----GUGGCuuUAUGGUG---GCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 97084 0.71 0.870677
Target:  5'- aGCUgGCCGAuuuggugAUgGCCGAGCAGGu -3'
miRNA:   3'- aCGGgUGGCUuua----UGgUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 31820 0.7 0.878367
Target:  5'- aGCCCGCgGugGUGCCaACCGAguccgGCAAc -3'
miRNA:   3'- aCGGGUGgCuuUAUGG-UGGCU-----UGUUc -5'
11385 3' -50.7 NC_003084.1 + 17624 0.7 0.878367
Target:  5'- cGCUCACCGAcaggGCCGCCaacuCGAGg -3'
miRNA:   3'- aCGGGUGGCUuua-UGGUGGcuu-GUUC- -5'
11385 3' -50.7 NC_003084.1 + 91579 0.69 0.912383
Target:  5'- aGCuUCGCCGGAAUaugcugaACCACCGGugguccgcuccuGCGAGg -3'
miRNA:   3'- aCG-GGUGGCUUUA-------UGGUGGCU------------UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 77902 0.69 0.919151
Target:  5'- gUGCCCuccuCCGAugugugGCCACCGGucaugAUGAGg -3'
miRNA:   3'- -ACGGGu---GGCUuua---UGGUGGCU-----UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 98649 0.69 0.919151
Target:  5'- -aCCUGCCGGAG-ACC-CUGAGCAAGa -3'
miRNA:   3'- acGGGUGGCUUUaUGGuGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 63040 0.69 0.919151
Target:  5'- cGCCgGCUGGGAUccGCCACUuuuACAAGg -3'
miRNA:   3'- aCGGgUGGCUUUA--UGGUGGcu-UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 68673 0.69 0.930624
Target:  5'- gUGCCCACCcaguGUuagcACCACCG-ACAAc -3'
miRNA:   3'- -ACGGGUGGcuu-UA----UGGUGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 22265 0.69 0.930624
Target:  5'- gGCCgguggCACCGGcccuCCAUCGAGCGGGg -3'
miRNA:   3'- aCGG-----GUGGCUuuauGGUGGCUUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.