miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11386 3' -54.4 NC_003084.1 + 20812 0.66 0.913832
Target:  5'- -----cGGCACgCAaacuCCAGCGcccaGCGGCCCa -3'
miRNA:   3'- ugacaaUCGUG-GU----GGUUGC----UGCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 71186 0.66 0.913832
Target:  5'- uGCUGUUuGUgaAUCAgCGACaccuGCGGCCCg -3'
miRNA:   3'- -UGACAAuCG--UGGUgGUUGc---UGCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 75325 0.66 0.912
Target:  5'- uUUGUUGGguguugcccgcguaCAUgGCCAACGugGGCUUc -3'
miRNA:   3'- uGACAAUC--------------GUGgUGGUUGCugCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 102200 0.66 0.907637
Target:  5'- -----cGGCACCACCGugGACacacgcuauggGGCUa -3'
miRNA:   3'- ugacaaUCGUGGUGGUugCUG-----------CCGGg -5'
11386 3' -54.4 NC_003084.1 + 85547 0.66 0.907637
Target:  5'- uAUUGUaguaauGCACCACCucGCG--GGCCCu -3'
miRNA:   3'- -UGACAau----CGUGGUGGu-UGCugCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 46969 0.66 0.907637
Target:  5'- --cGUUAaGCAgCAgUCAACGugGGCaCCg -3'
miRNA:   3'- ugaCAAU-CGUgGU-GGUUGCugCCG-GG- -5'
11386 3' -54.4 NC_003084.1 + 25732 0.66 0.894497
Target:  5'- -aUGUauGCAgCACCA---GCGGCCCg -3'
miRNA:   3'- ugACAauCGUgGUGGUugcUGCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 44170 0.66 0.887558
Target:  5'- cACUcg-AGCGCCgcauugaugACCAGCG-CGGCuCCa -3'
miRNA:   3'- -UGAcaaUCGUGG---------UGGUUGCuGCCG-GG- -5'
11386 3' -54.4 NC_003084.1 + 105621 0.66 0.88543
Target:  5'- uGCUGcacuccacccucauUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- -UGAC--------------AAUCGUGGUGGUUgcuGCCGGg -5'
11386 3' -54.4 NC_003084.1 + 1091 0.66 0.88543
Target:  5'- uGCUGaacuccacccucauUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- -UGAC--------------AAUCGUGGUGGUUgcuGCCGGg -5'
11386 3' -54.4 NC_003084.1 + 51463 0.67 0.88038
Target:  5'- aGCUcacAGCACCGguccaccuUCAACcACGGCCCa -3'
miRNA:   3'- -UGAcaaUCGUGGU--------GGUUGcUGCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 22282 0.67 0.872965
Target:  5'- uGCUGguaaaaacuUUAaccuCACCACCAACGuuCGGCCa -3'
miRNA:   3'- -UGAC---------AAUc---GUGGUGGUUGCu-GCCGGg -5'
11386 3' -54.4 NC_003084.1 + 95347 0.67 0.872965
Target:  5'- cACgg--AGCACCACUg--GACGGCCg -3'
miRNA:   3'- -UGacaaUCGUGGUGGuugCUGCCGGg -5'
11386 3' -54.4 NC_003084.1 + 1294 0.67 0.872965
Target:  5'- ------cGCGuCCACCAcucuaGCGugGGCCUg -3'
miRNA:   3'- ugacaauCGU-GGUGGU-----UGCugCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 93986 0.67 0.868406
Target:  5'- --aGUUGGCACCAUCuugugccgcagucCGGCGGUCg -3'
miRNA:   3'- ugaCAAUCGUGGUGGuu-----------GCUGCCGGg -5'
11386 3' -54.4 NC_003084.1 + 95443 0.67 0.865321
Target:  5'- aACUGUUcacccaugGGguCCGCgAGCGuacuguUGGCCCg -3'
miRNA:   3'- -UGACAA--------UCguGGUGgUUGCu-----GCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 60996 0.67 0.865321
Target:  5'- uGCgGgcaAGCACCACCgAACGACcgcuuguaccaGGCUCu -3'
miRNA:   3'- -UGaCaa-UCGUGGUGG-UUGCUG-----------CCGGG- -5'
11386 3' -54.4 NC_003084.1 + 31537 0.67 0.849368
Target:  5'- -gUGUUuauccGguCCGCCAACaGugGGUCCa -3'
miRNA:   3'- ugACAAu----CguGGUGGUUG-CugCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 7011 0.67 0.849368
Target:  5'- aGCUc--AGCACCACCGuaucccACcACGGUCCa -3'
miRNA:   3'- -UGAcaaUCGUGGUGGU------UGcUGCCGGG- -5'
11386 3' -54.4 NC_003084.1 + 49080 0.68 0.841072
Target:  5'- -aUGUUAGCACCGuauacggaggguCCAcuuuCGugGGgCCg -3'
miRNA:   3'- ugACAAUCGUGGU------------GGUu---GCugCCgGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.