miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11387 3' -50.4 NC_003084.1 + 68623 1.12 0.00432
Target:  5'- cUAACACAGCGAAAACCCAAGUCGGGCg -3'
miRNA:   3'- -AUUGUGUCGCUUUUGGGUUCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 59192 0.84 0.250362
Target:  5'- --cCACAGCuGGGGCCCGGGUUGGGCu -3'
miRNA:   3'- auuGUGUCGcUUUUGGGUUCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 59245 0.76 0.590701
Target:  5'- -cACACuuucggguGGCGuuuGAGCCCGGGUCGGGg -3'
miRNA:   3'- auUGUG--------UCGCu--UUUGGGUUCAGCCCg -5'
11387 3' -50.4 NC_003084.1 + 34704 0.76 0.590701
Target:  5'- ---uGCAGUGA--ACCCGGGUUGGGUa -3'
miRNA:   3'- auugUGUCGCUuuUGGGUUCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 44011 0.75 0.678116
Target:  5'- uUAACGCAGCGGAAugUgGAGgccCGGGg -3'
miRNA:   3'- -AUUGUGUCGCUUUugGgUUCa--GCCCg -5'
11387 3' -50.4 NC_003084.1 + 47395 0.75 0.678117
Target:  5'- gGAC-CAGUuGAGAgCCAAGUUGGGCu -3'
miRNA:   3'- aUUGuGUCGcUUUUgGGUUCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 32086 0.74 0.721109
Target:  5'- gAACACGuuucgucggcuGCGuuguAGCgCCGGGUCGGGCa -3'
miRNA:   3'- aUUGUGU-----------CGCuu--UUG-GGUUCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 106893 0.72 0.792543
Target:  5'- gAGCACugAGUGA--GCCCGAGUUgaGGGCc -3'
miRNA:   3'- aUUGUG--UCGCUuuUGGGUUCAG--CCCG- -5'
11387 3' -50.4 NC_003084.1 + 1451 0.72 0.792543
Target:  5'- -cGCuCGGguaCGAAAACCCAAGUCaGGCc -3'
miRNA:   3'- auUGuGUC---GCUUUUGGGUUCAGcCCG- -5'
11387 3' -50.4 NC_003084.1 + 95454 0.72 0.792544
Target:  5'- gGAUGCGGuCGGGAAaacguucauUCCGAGUCGGGUu -3'
miRNA:   3'- aUUGUGUC-GCUUUU---------GGGUUCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 15597 0.72 0.815358
Target:  5'- aAGCGCAGCGAGGugCUcaacgugagGAGcaguaucagcaaaccUCGGGCa -3'
miRNA:   3'- aUUGUGUCGCUUUugGG---------UUC---------------AGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 101067 0.72 0.818135
Target:  5'- cGAUGCGGCGAGAGCgaaccuucuugacuCCAccGGUgGGGCu -3'
miRNA:   3'- aUUGUGUCGCUUUUG--------------GGU--UCAgCCCG- -5'
11387 3' -50.4 NC_003084.1 + 106876 0.72 0.820896
Target:  5'- aAGCGCAGCGAAuucuaGGCCCug--CGGuGCa -3'
miRNA:   3'- aUUGUGUCGCUU-----UUGGGuucaGCC-CG- -5'
11387 3' -50.4 NC_003084.1 + 68797 0.72 0.829966
Target:  5'- cUAACACuGgGugGGCaCGAGUCGGGCu -3'
miRNA:   3'- -AUUGUGuCgCuuUUGgGUUCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 30778 0.71 0.864101
Target:  5'- -uGCGCAGCGugagcacGAAUCCA--UCGGGCc -3'
miRNA:   3'- auUGUGUCGCu------UUUGGGUucAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 51743 0.71 0.872056
Target:  5'- -uACGCgAGgGAAGGCCCA-GUUGGGg -3'
miRNA:   3'- auUGUG-UCgCUUUUGGGUuCAGCCCg -5'
11387 3' -50.4 NC_003084.1 + 74254 0.7 0.887221
Target:  5'- cAACugGGCGGuAAACUUGAG-CGGGUa -3'
miRNA:   3'- aUUGugUCGCU-UUUGGGUUCaGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 72354 0.7 0.901354
Target:  5'- -cACACAGCuGGGggacuuugucGACCCGGgccaacauuucGUCGGGCu -3'
miRNA:   3'- auUGUGUCG-CUU----------UUGGGUU-----------CAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 98809 0.69 0.914423
Target:  5'- cAGCGCAGCGuuAAGCgcuUCAAGgCGGGUa -3'
miRNA:   3'- aUUGUGUCGCu-UUUG---GGUUCaGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 39552 0.69 0.918741
Target:  5'- gGGCACAGCGAGAucaguuauauggguGCCUguGAGUaCGGaGUg -3'
miRNA:   3'- aUUGUGUCGCUUU--------------UGGG--UUCA-GCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.