Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11387 | 5' | -60.4 | NC_003084.1 | + | 68428 | 0.66 | 0.625695 |
Target: 5'- uUGGCaccaCCGACUaCG-GCCCcacgaaaguggACCCGGUGUc -3' miRNA: 3'- -AUCG----GGCUGA-GCaCGGG-----------UGGGUCACA- -5' |
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11387 | 5' | -60.4 | NC_003084.1 | + | 72494 | 0.66 | 0.594912 |
Target: 5'- uUGGCCCGGgUCGacaaaGUCC-CCCAGcUGUg -3' miRNA: 3'- -AUCGGGCUgAGCa----CGGGuGGGUC-ACA- -5' |
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11387 | 5' | -60.4 | NC_003084.1 | + | 31566 | 0.67 | 0.554281 |
Target: 5'- aGGUgCG-CUCGUcGCCCAaCCAGUGg -3' miRNA: 3'- aUCGgGCuGAGCA-CGGGUgGGUCACa -5' |
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11387 | 5' | -60.4 | NC_003084.1 | + | 106756 | 0.71 | 0.316099 |
Target: 5'- uUGGCCCucaACUCGgGCUCACUCAGUGc -3' miRNA: 3'- -AUCGGGc--UGAGCaCGGGUGGGUCACa -5' |
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11387 | 5' | -60.4 | NC_003084.1 | + | 64180 | 0.75 | 0.192357 |
Target: 5'- -cGUCCGACUUGUGCCCACUuuccggccgucggauCAGUGc -3' miRNA: 3'- auCGGGCUGAGCACGGGUGG---------------GUCACa -5' |
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11387 | 5' | -60.4 | NC_003084.1 | + | 68661 | 1.04 | 0.001379 |
Target: 5'- cUAGCCCGACUCGUGCCCACCCAGUGUu -3' miRNA: 3'- -AUCGGGCUGAGCACGGGUGGGUCACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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