miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11388 5' -52.2 NC_003084.1 + 46597 0.66 0.965118
Target:  5'- uGGCGAGCUgUAUUcgcgCACcaACUgGUACGc -3'
miRNA:   3'- -CCGCUCGGgGUAAa---GUG--UGAgCAUGU- -5'
11388 5' -52.2 NC_003084.1 + 81403 0.67 0.945015
Target:  5'- cGCGAGCCCCAcggUUACaACUUGc--- -3'
miRNA:   3'- cCGCUCGGGGUaa-AGUG-UGAGCaugu -5'
11388 5' -52.2 NC_003084.1 + 52229 0.67 0.9299
Target:  5'- -uUGAGUCCCGcgagguggcauaUUUUGCGCUCGUAUg -3'
miRNA:   3'- ccGCUCGGGGU------------AAAGUGUGAGCAUGu -5'
11388 5' -52.2 NC_003084.1 + 84775 0.69 0.853859
Target:  5'- gGGCGcacucucAGCgCCCuUUUUACACUCGUcCAg -3'
miRNA:   3'- -CCGC-------UCG-GGGuAAAGUGUGAGCAuGU- -5'
11388 5' -52.2 NC_003084.1 + 38630 0.7 0.837905
Target:  5'- cGGC-AGCCCCggUUCcCGCgggUGUGCAg -3'
miRNA:   3'- -CCGcUCGGGGuaAAGuGUGa--GCAUGU- -5'
11388 5' -52.2 NC_003084.1 + 11962 0.7 0.829207
Target:  5'- cGGUGAaauuGCaCCCAUUUCAC-C-CGUACGa -3'
miRNA:   3'- -CCGCU----CG-GGGUAAAGUGuGaGCAUGU- -5'
11388 5' -52.2 NC_003084.1 + 26581 0.71 0.79254
Target:  5'- cGCGAGCCCCu-----CGCUCGUguugGCAa -3'
miRNA:   3'- cCGCUCGGGGuaaaguGUGAGCA----UGU- -5'
11388 5' -52.2 NC_003084.1 + 71372 0.72 0.71226
Target:  5'- aGCGAGCCCCAguuguccgCAUAUcUGUACAc -3'
miRNA:   3'- cCGCUCGGGGUaaa-----GUGUGaGCAUGU- -5'
11388 5' -52.2 NC_003084.1 + 97539 0.74 0.637885
Target:  5'- uGGCGGuGCCCCucaaagUCAgccaaACUCGUGCAg -3'
miRNA:   3'- -CCGCU-CGGGGuaa---AGUg----UGAGCAUGU- -5'
11388 5' -52.2 NC_003084.1 + 35558 0.75 0.5527
Target:  5'- aGUaGGaCCCCAcUUCACACUCGUGCu -3'
miRNA:   3'- cCGcUC-GGGGUaAAGUGUGAGCAUGu -5'
11388 5' -52.2 NC_003084.1 + 69638 1.11 0.003254
Target:  5'- uGGCGAGCCCCAUUUCACACUCGUACAa -3'
miRNA:   3'- -CCGCUCGGGGUAAAGUGUGAGCAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.