miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11389 3' -45.5 NC_003084.1 + 28354 0.66 0.999928
Target:  5'- aGUugGAAAUugAAGCG-AACGGUaGCa- -3'
miRNA:   3'- aCAugCUUUA--UUUGCgUUGCCA-CGac -5'
11389 3' -45.5 NC_003084.1 + 63803 0.66 0.999903
Target:  5'- -uUGCGAG--GAGCGCGGuuugaGGUGUUGg -3'
miRNA:   3'- acAUGCUUuaUUUGCGUUg----CCACGAC- -5'
11389 3' -45.5 NC_003084.1 + 90177 0.66 0.999832
Target:  5'- uUGUACGcacccuGCGCAGCGucGUGCa- -3'
miRNA:   3'- -ACAUGCuuuauuUGCGUUGC--CACGac -5'
11389 3' -45.5 NC_003084.1 + 82044 0.66 0.999828
Target:  5'- gGUAUGGAGUcgguggaGAAcCGUuuGGCGGUGCUa -3'
miRNA:   3'- aCAUGCUUUA-------UUU-GCG--UUGCCACGAc -5'
11389 3' -45.5 NC_003084.1 + 39586 0.66 0.999818
Target:  5'- aGUACGGAGUguauuuggugucacGAACGgGccggGCGGUGgUGa -3'
miRNA:   3'- aCAUGCUUUA--------------UUUGCgU----UGCCACgAC- -5'
11389 3' -45.5 NC_003084.1 + 22871 0.67 0.999782
Target:  5'- gUGUugGAuuuGAUGaAACGCc-CGGUGCg- -3'
miRNA:   3'- -ACAugCU---UUAU-UUGCGuuGCCACGac -5'
11389 3' -45.5 NC_003084.1 + 90027 0.67 0.999782
Target:  5'- cGUACGAGuauAUGAugcacgacgcuGCGCAG-GGUGCg- -3'
miRNA:   3'- aCAUGCUU---UAUU-----------UGCGUUgCCACGac -5'
11389 3' -45.5 NC_003084.1 + 98416 0.67 0.999718
Target:  5'- cUGaACGAGcUGAGCGauGCGGUGCg- -3'
miRNA:   3'- -ACaUGCUUuAUUUGCguUGCCACGac -5'
11389 3' -45.5 NC_003084.1 + 46921 0.67 0.999639
Target:  5'- gGUACaAAAUAGGCGCAGCuuUGCg- -3'
miRNA:   3'- aCAUGcUUUAUUUGCGUUGccACGac -5'
11389 3' -45.5 NC_003084.1 + 106064 0.67 0.999639
Target:  5'- aGUGCGAGAUGGAUGgGAUuacGCUGa -3'
miRNA:   3'- aCAUGCUUUAUUUGCgUUGccaCGAC- -5'
11389 3' -45.5 NC_003084.1 + 70943 0.67 0.999639
Target:  5'- cUGgaccuCGAGG-AggUGCgAACGGUGCUGa -3'
miRNA:   3'- -ACau---GCUUUaUuuGCG-UUGCCACGAC- -5'
11389 3' -45.5 NC_003084.1 + 23993 0.67 0.999639
Target:  5'- --cACGAGuacGUGGACcCcACGGUGCUGu -3'
miRNA:   3'- acaUGCUU---UAUUUGcGuUGCCACGAC- -5'
11389 3' -45.5 NC_003084.1 + 80059 0.67 0.999639
Target:  5'- cGU-UGAGuauGACGCAACGGUaGCUu -3'
miRNA:   3'- aCAuGCUUuauUUGCGUUGCCA-CGAc -5'
11389 3' -45.5 NC_003084.1 + 11222 0.67 0.999541
Target:  5'- --gGCGAAacGUGAGCGCAugGagcaGCUGa -3'
miRNA:   3'- acaUGCUU--UAUUUGCGUugCca--CGAC- -5'
11389 3' -45.5 NC_003084.1 + 1543 0.68 0.999274
Target:  5'- gGUGCGAGAUGGAUGgAAUGaG-GCUa -3'
miRNA:   3'- aCAUGCUUUAUUUGCgUUGC-CaCGAc -5'
11389 3' -45.5 NC_003084.1 + 31800 0.68 0.999096
Target:  5'- cGUACGu-AUAAAUGCGgccgagcccGCGGUGgUGc -3'
miRNA:   3'- aCAUGCuuUAUUUGCGU---------UGCCACgAC- -5'
11389 3' -45.5 NC_003084.1 + 18679 0.68 0.998882
Target:  5'- gUGUACGGGAUGugcuGCGaCGACGG-GUUc -3'
miRNA:   3'- -ACAUGCUUUAUu---UGC-GUUGCCaCGAc -5'
11389 3' -45.5 NC_003084.1 + 102765 0.68 0.998882
Target:  5'- --aACGAcuAUGAGCGcCAGCGgGUGUUGg -3'
miRNA:   3'- acaUGCUu-UAUUUGC-GUUGC-CACGAC- -5'
11389 3' -45.5 NC_003084.1 + 69605 0.68 0.998627
Target:  5'- cUGUuCGAAAUcgAGAUGCGGCGGgGCa- -3'
miRNA:   3'- -ACAuGCUUUA--UUUGCGUUGCCaCGac -5'
11389 3' -45.5 NC_003084.1 + 91817 0.69 0.998323
Target:  5'- aGUcACGcaGAGUAAACGUuacACGGUGCa- -3'
miRNA:   3'- aCA-UGC--UUUAUUUGCGu--UGCCACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.