miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11389 5' -53.3 NC_003084.1 + 91323 0.66 0.939616
Target:  5'- aGCuGCACCGUucaaacuuuuCGUCCAAUUCg -3'
miRNA:   3'- cCGuCGUGGCAuuacc-----GCAGGUUGAG- -5'
11389 5' -53.3 NC_003084.1 + 32804 0.66 0.937623
Target:  5'- cGGCAGCauACCGUAGUu-CGUUCucCUCa -3'
miRNA:   3'- -CCGUCG--UGGCAUUAccGCAGGuuGAG- -5'
11389 5' -53.3 NC_003084.1 + 60464 0.66 0.937623
Target:  5'- gGGCcuuGUugCGgucAcgGGCGUCCAAaUCg -3'
miRNA:   3'- -CCGu--CGugGCa--UuaCCGCAGGUUgAG- -5'
11389 5' -53.3 NC_003084.1 + 42668 0.66 0.937623
Target:  5'- gGGCGGU-CCGUuguugGGUGGCGUagacgaAACUCc -3'
miRNA:   3'- -CCGUCGuGGCA-----UUACCGCAgg----UUGAG- -5'
11389 5' -53.3 NC_003084.1 + 15783 0.66 0.93246
Target:  5'- cGCAGCAcguCCGgcauuuUGGUGUaCAGCUCc -3'
miRNA:   3'- cCGUCGU---GGCauu---ACCGCAgGUUGAG- -5'
11389 5' -53.3 NC_003084.1 + 69873 0.66 0.93246
Target:  5'- aGUAcGCGCaCGUuuAUGGCGucaaaccaggcUCCAACUCu -3'
miRNA:   3'- cCGU-CGUG-GCAu-UACCGC-----------AGGUUGAG- -5'
11389 5' -53.3 NC_003084.1 + 60115 0.66 0.93246
Target:  5'- gGGCAGUAuCCGgcgGUGGUGU-CAACg- -3'
miRNA:   3'- -CCGUCGU-GGCau-UACCGCAgGUUGag -5'
11389 5' -53.3 NC_003084.1 + 61281 0.66 0.92135
Target:  5'- uGGguGCACCGagcGGUGGCGUgguggUCGugUa -3'
miRNA:   3'- -CCguCGUGGCa--UUACCGCA-----GGUugAg -5'
11389 5' -53.3 NC_003084.1 + 67585 0.66 0.92135
Target:  5'- aGCAGUACC-UGGUGGUgagcucGUCCAAgUUg -3'
miRNA:   3'- cCGUCGUGGcAUUACCG------CAGGUUgAG- -5'
11389 5' -53.3 NC_003084.1 + 81584 0.66 0.915403
Target:  5'- --aAGCugCGgac-GGCGUCgAACUCg -3'
miRNA:   3'- ccgUCGugGCauuaCCGCAGgUUGAG- -5'
11389 5' -53.3 NC_003084.1 + 30509 0.67 0.909197
Target:  5'- uGCAGCuCCGUuggguuaaAGUGG-G-CCAACUCg -3'
miRNA:   3'- cCGUCGuGGCA--------UUACCgCaGGUUGAG- -5'
11389 5' -53.3 NC_003084.1 + 12618 0.67 0.909197
Target:  5'- cGGuCAGgACCGccaGAUGGCGUaCAugUCc -3'
miRNA:   3'- -CC-GUCgUGGCa--UUACCGCAgGUugAG- -5'
11389 5' -53.3 NC_003084.1 + 68560 0.67 0.902733
Target:  5'- cGUGGgGCCGUAGUcGGUGgugCCAACa- -3'
miRNA:   3'- cCGUCgUGGCAUUA-CCGCa--GGUUGag -5'
11389 5' -53.3 NC_003084.1 + 60516 0.67 0.902733
Target:  5'- gGGCAGCACCccaaacuUGGUGaCCAgAUUCg -3'
miRNA:   3'- -CCGUCGUGGcauu---ACCGCaGGU-UGAG- -5'
11389 5' -53.3 NC_003084.1 + 93856 0.69 0.815901
Target:  5'- uGCGGCACaa-GAUGGUG-CCAACUUu -3'
miRNA:   3'- cCGUCGUGgcaUUACCGCaGGUUGAG- -5'
11389 5' -53.3 NC_003084.1 + 54020 0.69 0.80675
Target:  5'- aGCAGCACCGgucccGUGGUGcCCGuAgUCg -3'
miRNA:   3'- cCGUCGUGGCau---UACCGCaGGU-UgAG- -5'
11389 5' -53.3 NC_003084.1 + 12888 0.69 0.801177
Target:  5'- aGGguGCGCUGgcuAUGGCGcgcacguuaaaaauuUCCAACg- -3'
miRNA:   3'- -CCguCGUGGCau-UACCGC---------------AGGUUGag -5'
11389 5' -53.3 NC_003084.1 + 63581 0.7 0.768518
Target:  5'- uGGcCGGUuaACgGUGAcGGCGUCCAGCg- -3'
miRNA:   3'- -CC-GUCG--UGgCAUUaCCGCAGGUUGag -5'
11389 5' -53.3 NC_003084.1 + 83019 0.7 0.768518
Target:  5'- gGGguGaCACCGUAAauuacGGCcaCCGACUCg -3'
miRNA:   3'- -CCguC-GUGGCAUUa----CCGcaGGUUGAG- -5'
11389 5' -53.3 NC_003084.1 + 24848 0.7 0.768518
Target:  5'- cGguGCACCGUGuUGGCGUUUuguGACa- -3'
miRNA:   3'- cCguCGUGGCAUuACCGCAGG---UUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.