miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11390 5' -53.5 NC_003084.1 + 23952 0.66 0.92903
Target:  5'- -gCCAgAGUACgaaaucgaaACGGGCGUGuuuuacGCCg -3'
miRNA:   3'- aaGGUgUCAUG---------UGCCCGCAUuac---CGG- -5'
11390 5' -53.5 NC_003084.1 + 18473 0.66 0.923422
Target:  5'- -aCCACAGUuuuacucuGCACGGGgGUGAcguuacagacguUGcGUCa -3'
miRNA:   3'- aaGGUGUCA--------UGUGCCCgCAUU------------AC-CGG- -5'
11390 5' -53.5 NC_003084.1 + 9455 0.66 0.917552
Target:  5'- gUCUACAGcuUugAUGGuuGUAGUGGCg -3'
miRNA:   3'- aAGGUGUC--AugUGCCcgCAUUACCGg -5'
11390 5' -53.5 NC_003084.1 + 42506 0.66 0.905028
Target:  5'- gUUCCACA----GCGGGUugGUAuuuUGGCCg -3'
miRNA:   3'- -AAGGUGUcaugUGCCCG--CAUu--ACCGG- -5'
11390 5' -53.5 NC_003084.1 + 866 0.67 0.898378
Target:  5'- cUCCACGGccaaauCACGcuGUGUuAUGGCCa -3'
miRNA:   3'- aAGGUGUCau----GUGCc-CGCAuUACCGG- -5'
11390 5' -53.5 NC_003084.1 + 106720 0.67 0.894266
Target:  5'- aUCUugGGguugugauacuucuuUugGCGGGUGUAcuUGGCCc -3'
miRNA:   3'- aAGGugUC---------------AugUGCCCGCAUu-ACCGG- -5'
11390 5' -53.5 NC_003084.1 + 74887 0.67 0.891475
Target:  5'- -gCCAUGGUACcaaucguguuGUGGuGCGUAAUGGUCa -3'
miRNA:   3'- aaGGUGUCAUG----------UGCC-CGCAUUACCGG- -5'
11390 5' -53.5 NC_003084.1 + 36071 0.67 0.876921
Target:  5'- -aCCAcCAGUugGCGGuGCGg---GGCUu -3'
miRNA:   3'- aaGGU-GUCAugUGCC-CGCauuaCCGG- -5'
11390 5' -53.5 NC_003084.1 + 98216 0.67 0.876921
Target:  5'- aUUCCuCGGcGCGCGGGaUGuUGGUGGCa -3'
miRNA:   3'- -AAGGuGUCaUGUGCCC-GC-AUUACCGg -5'
11390 5' -53.5 NC_003084.1 + 43611 0.68 0.861407
Target:  5'- --aCugGGUACACuugguGGCGgcgGUGGCCa -3'
miRNA:   3'- aagGugUCAUGUGc----CCGCau-UACCGG- -5'
11390 5' -53.5 NC_003084.1 + 61283 0.68 0.861407
Target:  5'- --gUugGGUGCACcgagcgguGGCGUGGUGGUCg -3'
miRNA:   3'- aagGugUCAUGUGc-------CCGCAUUACCGG- -5'
11390 5' -53.5 NC_003084.1 + 18168 0.68 0.822375
Target:  5'- -aCCAUcGUGCggGCGGGCGUuuugcugugcugGGCCa -3'
miRNA:   3'- aaGGUGuCAUG--UGCCCGCAuua---------CCGG- -5'
11390 5' -53.5 NC_003084.1 + 35207 0.68 0.818778
Target:  5'- cUUCCACGGUAaaguUGGGCucagGGUGGaCCg -3'
miRNA:   3'- -AAGGUGUCAUgu--GCCCGca--UUACC-GG- -5'
11390 5' -53.5 NC_003084.1 + 63985 0.68 0.818778
Target:  5'- aUCUACGGUGcCGCGGGCGaggAAgacaccugcGGCUg -3'
miRNA:   3'- aAGGUGUCAU-GUGCCCGCa--UUa--------CCGG- -5'
11390 5' -53.5 NC_003084.1 + 25026 0.69 0.791851
Target:  5'- aUCCACuuucccguuaggggcGUGCACGaccuGGCGUGcucuuggcuuGUGGCCa -3'
miRNA:   3'- aAGGUGu--------------CAUGUGC----CCGCAU----------UACCGG- -5'
11390 5' -53.5 NC_003084.1 + 19932 0.7 0.731171
Target:  5'- cUCCAUuugugGGUACAauggUGGGCGUAAUGuCCu -3'
miRNA:   3'- aAGGUG-----UCAUGU----GCCCGCAUUACcGG- -5'
11390 5' -53.5 NC_003084.1 + 78332 0.71 0.66805
Target:  5'- cUCgACGGUACGCGGGaGUAAcGGUa -3'
miRNA:   3'- aAGgUGUCAUGUGCCCgCAUUaCCGg -5'
11390 5' -53.5 NC_003084.1 + 101497 0.71 0.657358
Target:  5'- aUUgACAuguGUACACGGGCc--GUGGCCg -3'
miRNA:   3'- aAGgUGU---CAUGUGCCCGcauUACCGG- -5'
11390 5' -53.5 NC_003084.1 + 103068 0.73 0.571798
Target:  5'- aUCCuuucCGGUACaaagACGGGCGgu-UGGCCc -3'
miRNA:   3'- aAGGu---GUCAUG----UGCCCGCauuACCGG- -5'
11390 5' -53.5 NC_003084.1 + 6732 0.74 0.504249
Target:  5'- gUUCCACAGUuugcuuaGCugGGGCcaaauacccuccuUGGUGGCCg -3'
miRNA:   3'- -AAGGUGUCA-------UGugCCCGc------------AUUACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.