miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11391 3' -53.6 NC_003084.1 + 2379 0.66 0.930761
Target:  5'- aGUGGGgaUGGcCCGCGaaaucaccucGUCGGGguggauguCGGCg -3'
miRNA:   3'- aCACCC--ACC-GGUGU----------UAGUCCau------GUCG- -5'
11391 3' -53.6 NC_003084.1 + 1474 0.66 0.930221
Target:  5'- uUGUGGccaggauGUGGCCAaguCGcUCGGGUACGa- -3'
miRNA:   3'- -ACACC-------CACCGGU---GUuAGUCCAUGUcg -5'
11391 3' -53.6 NC_003084.1 + 63013 0.66 0.913428
Target:  5'- --aGGGUcgcgagaucccGGCCACAuugcUCGaGUACGGCg -3'
miRNA:   3'- acaCCCA-----------CCGGUGUu---AGUcCAUGUCG- -5'
11391 3' -53.6 NC_003084.1 + 28270 0.66 0.907129
Target:  5'- gUGgGGGUGGaCugGAUCAcGUACgAGCu -3'
miRNA:   3'- -ACaCCCACCgGugUUAGUcCAUG-UCG- -5'
11391 3' -53.6 NC_003084.1 + 76094 0.66 0.907129
Target:  5'- aGUGG-UGGaCCGCAAcccCAGGUuUAGCu -3'
miRNA:   3'- aCACCcACC-GGUGUUa--GUCCAuGUCG- -5'
11391 3' -53.6 NC_003084.1 + 63153 0.66 0.904537
Target:  5'- gGUGGGccucgaccucaagGGUUACAGUUAcGGUACGGa -3'
miRNA:   3'- aCACCCa------------CCGGUGUUAGU-CCAUGUCg -5'
11391 3' -53.6 NC_003084.1 + 68791 0.67 0.886698
Target:  5'- -cUGGGUGGgCACgAGUCGGGcUAgAGg -3'
miRNA:   3'- acACCCACCgGUG-UUAGUCC-AUgUCg -5'
11391 3' -53.6 NC_003084.1 + 102081 0.67 0.87939
Target:  5'- --cGGGUGGCCcccuuCGAUguGGaguUugAGCg -3'
miRNA:   3'- acaCCCACCGGu----GUUAguCC---AugUCG- -5'
11391 3' -53.6 NC_003084.1 + 107450 0.67 0.87939
Target:  5'- --cGGGUGGUCcuugcccaACAAUUGGuGUACGGUc -3'
miRNA:   3'- acaCCCACCGG--------UGUUAGUC-CAUGUCG- -5'
11391 3' -53.6 NC_003084.1 + 101111 0.67 0.87184
Target:  5'- cUGUGGugGUGGCgGCGGUgGuGGUgacuGCAGCc -3'
miRNA:   3'- -ACACC--CACCGgUGUUAgU-CCA----UGUCG- -5'
11391 3' -53.6 NC_003084.1 + 12404 0.69 0.784622
Target:  5'- aGUGGGaccaCCGCAAUgGGGUcCAGCu -3'
miRNA:   3'- aCACCCacc-GGUGUUAgUCCAuGUCG- -5'
11391 3' -53.6 NC_003084.1 + 40679 0.71 0.682543
Target:  5'- uUGUGGGUGGUCugGccccUCA--UACAGCg -3'
miRNA:   3'- -ACACCCACCGGugUu---AGUccAUGUCG- -5'
11391 3' -53.6 NC_003084.1 + 76023 1.13 0.001587
Target:  5'- aUGUGGGUGGCCACAAUCAGGUACAGCa -3'
miRNA:   3'- -ACACCCACCGGUGUUAGUCCAUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.