miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11391 5' -58 NC_003084.1 + 99521 0.66 0.745905
Target:  5'- aCAGAUUa--UCGGGCAGCGaauuGCC-CCGu -3'
miRNA:   3'- -GUCUAAgugGGCCCGUCGC----UGGuGGU- -5'
11391 5' -58 NC_003084.1 + 25873 0.66 0.72609
Target:  5'- cCAGcgUgCACCCGGGCcGCugGugCugCAu -3'
miRNA:   3'- -GUCuaA-GUGGGCCCGuCG--CugGugGU- -5'
11391 5' -58 NC_003084.1 + 40740 0.66 0.72609
Target:  5'- gAGAaggCACCCGGuCGGCGugUccuGCCAa -3'
miRNA:   3'- gUCUaa-GUGGGCCcGUCGCugG---UGGU- -5'
11391 5' -58 NC_003084.1 + 104746 0.67 0.654614
Target:  5'- uCGGAUggACUCGucaaGCAGCGcACCACCAc -3'
miRNA:   3'- -GUCUAagUGGGCc---CGUCGC-UGGUGGU- -5'
11391 5' -58 NC_003084.1 + 41546 0.68 0.644258
Target:  5'- ----gUCGCCUGGaGCAGCGuCCGCa- -3'
miRNA:   3'- gucuaAGUGGGCC-CGUCGCuGGUGgu -5'
11391 5' -58 NC_003084.1 + 87663 0.68 0.644258
Target:  5'- uCAGAUUUucgaugGCCUGGGUgAGCucccgguuuauGGCCACCAg -3'
miRNA:   3'- -GUCUAAG------UGGGCCCG-UCG-----------CUGGUGGU- -5'
11391 5' -58 NC_003084.1 + 3724 0.69 0.582198
Target:  5'- -cGAUUUAUuuGGGUcucauAGCGGCgCACCAg -3'
miRNA:   3'- guCUAAGUGggCCCG-----UCGCUG-GUGGU- -5'
11391 5' -58 NC_003084.1 + 40323 0.7 0.510547
Target:  5'- gAGGUUgGgCUGGGUAGCGcaugaugagcacgGCCACCAu -3'
miRNA:   3'- gUCUAAgUgGGCCCGUCGC-------------UGGUGGU- -5'
11391 5' -58 NC_003084.1 + 99735 0.71 0.472757
Target:  5'- gAGGUUUuCCCGGGCgaaucgGGUGACC-CCAu -3'
miRNA:   3'- gUCUAAGuGGGCCCG------UCGCUGGuGGU- -5'
11391 5' -58 NC_003084.1 + 4655 0.71 0.453932
Target:  5'- cCAGAUcgGCaCUGGGCAGCGGCUugUg -3'
miRNA:   3'- -GUCUAagUG-GGCCCGUCGCUGGugGu -5'
11391 5' -58 NC_003084.1 + 53604 0.71 0.453932
Target:  5'- gGGAUUUcaACCCGGGCcgcguGGgGAgCACCAa -3'
miRNA:   3'- gUCUAAG--UGGGCCCG-----UCgCUgGUGGU- -5'
11391 5' -58 NC_003084.1 + 76059 1.08 0.001373
Target:  5'- cCAGAUUCACCCGGGCAGCGACCACCAa -3'
miRNA:   3'- -GUCUAAGUGGGCCCGUCGCUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.