Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11392 | 3' | -61 | NC_003084.1 | + | 15184 | 0.66 | 0.639195 |
Target: 5'- aGGGUGgCGGUGGuugugACAACaaGGCgGAg -3' miRNA: 3'- gCCCGUgGCCACC-----UGUUGgaCCGgCU- -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 95192 | 0.66 | 0.639195 |
Target: 5'- --uGCuuCGuucGGGCAACCUGGCCGAc -3' miRNA: 3'- gccCGugGCca-CCUGUUGGACCGGCU- -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 5637 | 0.66 | 0.5889 |
Target: 5'- uGuGCACCuGGUGGAaAACCUGuGCCu- -3' miRNA: 3'- gCcCGUGG-CCACCUgUUGGAC-CGGcu -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 53442 | 0.67 | 0.578905 |
Target: 5'- --uGCACCGGuUGGAgGGCCUGuuCGAg -3' miRNA: 3'- gccCGUGGCC-ACCUgUUGGACcgGCU- -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 89242 | 0.67 | 0.562993 |
Target: 5'- aGuGGCACCccggcGaaaccagcuucaagcUGGACGACCUGGCCu- -3' miRNA: 3'- gC-CCGUGGc----C---------------ACCUGUUGGACCGGcu -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 76109 | 0.68 | 0.519919 |
Target: 5'- uGGGCACCGGUGGgACAugauuucgcgguACUUGuuaCCGu -3' miRNA: 3'- gCCCGUGGCCACC-UGU------------UGGACc--GGCu -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 39612 | 0.68 | 0.519919 |
Target: 5'- aCGGGCcgGgCGGUGGugA-CCguugacGGCCGGu -3' miRNA: 3'- -GCCCG--UgGCCACCugUuGGa-----CCGGCU- -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 73227 | 0.68 | 0.500764 |
Target: 5'- uCGGGCGCUacaaGGACAACCUG-CCGc -3' miRNA: 3'- -GCCCGUGGcca-CCUGUUGGACcGGCu -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 102585 | 0.68 | 0.476341 |
Target: 5'- aGGGCGCCGGgauucgacgUGGACGgugaaaucgugcaggACgaGGCCa- -3' miRNA: 3'- gCCCGUGGCC---------ACCUGU---------------UGgaCCGGcu -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 919 | 0.69 | 0.454335 |
Target: 5'- uGGG-GCCGGUcguaacGGCAugUUGGCCGAa -3' miRNA: 3'- gCCCgUGGCCAc-----CUGUugGACCGGCU- -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 67740 | 0.7 | 0.385244 |
Target: 5'- gGuGGUAuuUCGGUGGGCAACUUGGaCGAg -3' miRNA: 3'- gC-CCGU--GGCCACCUGUUGGACCgGCU- -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 99926 | 0.7 | 0.361187 |
Target: 5'- cCGGGUACguugGGACGACUggUGGCCGAc -3' miRNA: 3'- -GCCCGUGgccaCCUGUUGG--ACCGGCU- -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 65822 | 0.73 | 0.24519 |
Target: 5'- -cGGCACCGGUGGugAACCcGGagGAg -3' miRNA: 3'- gcCCGUGGCCACCugUUGGaCCggCU- -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 67608 | 0.73 | 0.239431 |
Target: 5'- aCGGGCACCuugaUGGGCGACCUGgaGCUGGc -3' miRNA: 3'- -GCCCGUGGcc--ACCUGUUGGAC--CGGCU- -5' |
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11392 | 3' | -61 | NC_003084.1 | + | 79960 | 1.08 | 0.000892 |
Target: 5'- uCGGGCACCGGUGGACAACCUGGCCGAc -3' miRNA: 3'- -GCCCGUGGCCACCUGUUGGACCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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