miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11392 3' -61 NC_003084.1 + 15184 0.66 0.639195
Target:  5'- aGGGUGgCGGUGGuugugACAACaaGGCgGAg -3'
miRNA:   3'- gCCCGUgGCCACC-----UGUUGgaCCGgCU- -5'
11392 3' -61 NC_003084.1 + 95192 0.66 0.639195
Target:  5'- --uGCuuCGuucGGGCAACCUGGCCGAc -3'
miRNA:   3'- gccCGugGCca-CCUGUUGGACCGGCU- -5'
11392 3' -61 NC_003084.1 + 5637 0.66 0.5889
Target:  5'- uGuGCACCuGGUGGAaAACCUGuGCCu- -3'
miRNA:   3'- gCcCGUGG-CCACCUgUUGGAC-CGGcu -5'
11392 3' -61 NC_003084.1 + 53442 0.67 0.578905
Target:  5'- --uGCACCGGuUGGAgGGCCUGuuCGAg -3'
miRNA:   3'- gccCGUGGCC-ACCUgUUGGACcgGCU- -5'
11392 3' -61 NC_003084.1 + 89242 0.67 0.562993
Target:  5'- aGuGGCACCccggcGaaaccagcuucaagcUGGACGACCUGGCCu- -3'
miRNA:   3'- gC-CCGUGGc----C---------------ACCUGUUGGACCGGcu -5'
11392 3' -61 NC_003084.1 + 76109 0.68 0.519919
Target:  5'- uGGGCACCGGUGGgACAugauuucgcgguACUUGuuaCCGu -3'
miRNA:   3'- gCCCGUGGCCACC-UGU------------UGGACc--GGCu -5'
11392 3' -61 NC_003084.1 + 39612 0.68 0.519919
Target:  5'- aCGGGCcgGgCGGUGGugA-CCguugacGGCCGGu -3'
miRNA:   3'- -GCCCG--UgGCCACCugUuGGa-----CCGGCU- -5'
11392 3' -61 NC_003084.1 + 73227 0.68 0.500764
Target:  5'- uCGGGCGCUacaaGGACAACCUG-CCGc -3'
miRNA:   3'- -GCCCGUGGcca-CCUGUUGGACcGGCu -5'
11392 3' -61 NC_003084.1 + 102585 0.68 0.476341
Target:  5'- aGGGCGCCGGgauucgacgUGGACGgugaaaucgugcaggACgaGGCCa- -3'
miRNA:   3'- gCCCGUGGCC---------ACCUGU---------------UGgaCCGGcu -5'
11392 3' -61 NC_003084.1 + 919 0.69 0.454335
Target:  5'- uGGG-GCCGGUcguaacGGCAugUUGGCCGAa -3'
miRNA:   3'- gCCCgUGGCCAc-----CUGUugGACCGGCU- -5'
11392 3' -61 NC_003084.1 + 67740 0.7 0.385244
Target:  5'- gGuGGUAuuUCGGUGGGCAACUUGGaCGAg -3'
miRNA:   3'- gC-CCGU--GGCCACCUGUUGGACCgGCU- -5'
11392 3' -61 NC_003084.1 + 99926 0.7 0.361187
Target:  5'- cCGGGUACguugGGACGACUggUGGCCGAc -3'
miRNA:   3'- -GCCCGUGgccaCCUGUUGG--ACCGGCU- -5'
11392 3' -61 NC_003084.1 + 65822 0.73 0.24519
Target:  5'- -cGGCACCGGUGGugAACCcGGagGAg -3'
miRNA:   3'- gcCCGUGGCCACCugUUGGaCCggCU- -5'
11392 3' -61 NC_003084.1 + 67608 0.73 0.239431
Target:  5'- aCGGGCACCuugaUGGGCGACCUGgaGCUGGc -3'
miRNA:   3'- -GCCCGUGGcc--ACCUGUUGGAC--CGGCU- -5'
11392 3' -61 NC_003084.1 + 79960 1.08 0.000892
Target:  5'- uCGGGCACCGGUGGACAACCUGGCCGAc -3'
miRNA:   3'- -GCCCGUGGCCACCUGUUGGACCGGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.