Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11394 | 5' | -50 | NC_003084.1 | + | 81393 | 0.66 | 0.992058 |
Target: 5'- ----gGACgUGGUUcGCGAGCcCCACGg -3' miRNA: 3'- guuagCUGgACUAAcUGUUCG-GGUGC- -5' |
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11394 | 5' | -50 | NC_003084.1 | + | 33443 | 0.67 | 0.984533 |
Target: 5'- aCAuUCGAUUUGGUUGAaCGGGUUCACc -3' miRNA: 3'- -GUuAGCUGGACUAACU-GUUCGGGUGc -5' |
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11394 | 5' | -50 | NC_003084.1 | + | 34250 | 0.67 | 0.984533 |
Target: 5'- uGAUCGugUUGGccaUUG-CAGGUCCACu -3' miRNA: 3'- gUUAGCugGACU---AACuGUUCGGGUGc -5' |
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11394 | 5' | -50 | NC_003084.1 | + | 26072 | 0.67 | 0.980335 |
Target: 5'- ----gGACCUGAggaugGACGAGuCCuCACGu -3' miRNA: 3'- guuagCUGGACUaa---CUGUUC-GG-GUGC- -5' |
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11394 | 5' | -50 | NC_003084.1 | + | 75651 | 0.68 | 0.969478 |
Target: 5'- gAAUcCGGCCcGGUUGGCGA-CCCGCu -3' miRNA: 3'- gUUA-GCUGGaCUAACUGUUcGGGUGc -5' |
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11394 | 5' | -50 | NC_003084.1 | + | 59837 | 0.68 | 0.965171 |
Target: 5'- --cUUGACCgGAUUGuCGagcagcacaauuugAGCCCACGa -3' miRNA: 3'- guuAGCUGGaCUAACuGU--------------UCGGGUGC- -5' |
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11394 | 5' | -50 | NC_003084.1 | + | 13651 | 0.71 | 0.900088 |
Target: 5'- ---aCGACCUGGUcGuuCGAGCCCaACGa -3' miRNA: 3'- guuaGCUGGACUAaCu-GUUCGGG-UGC- -5' |
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11394 | 5' | -50 | NC_003084.1 | + | 81802 | 1.11 | 0.005739 |
Target: 5'- aCAAUCGACCUGAUUGACAAGCCCACGg -3' miRNA: 3'- -GUUAGCUGGACUAACUGUUCGGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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