miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11395 3' -50.2 NC_003084.1 + 99525 0.66 0.990499
Target:  5'- -cGugACCGgc--UUACGGCCGgUGGc -3'
miRNA:   3'- caCugUGGCauuuAAUGCCGGUgGCU- -5'
11395 3' -50.2 NC_003084.1 + 94504 0.66 0.989119
Target:  5'- cGUGGCGCaCGUccggUGuuGCCGCCGGu -3'
miRNA:   3'- -CACUGUG-GCAuuuaAUgcCGGUGGCU- -5'
11395 3' -50.2 NC_003084.1 + 2359 0.66 0.989119
Target:  5'- uUGGCACCGUAAacgcauacaGUggggAUGGCC-CgCGAa -3'
miRNA:   3'- cACUGUGGCAUU---------UAa---UGCCGGuG-GCU- -5'
11395 3' -50.2 NC_003084.1 + 66560 0.66 0.987588
Target:  5'- uUGACAgCgGUAGAcc-UGGCCACCGc -3'
miRNA:   3'- cACUGU-GgCAUUUaauGCCGGUGGCu -5'
11395 3' -50.2 NC_003084.1 + 104648 0.66 0.984033
Target:  5'- -cGGCugCGUgAGAUUGCGcuCCACUGGg -3'
miRNA:   3'- caCUGugGCA-UUUAAUGCc-GGUGGCU- -5'
11395 3' -50.2 NC_003084.1 + 39837 0.66 0.984033
Target:  5'- -cGACAUCGUGAGgcUUAUGGCggggaacaggugCACCGu -3'
miRNA:   3'- caCUGUGGCAUUU--AAUGCCG------------GUGGCu -5'
11395 3' -50.2 NC_003084.1 + 21344 0.67 0.981988
Target:  5'- --uGCACCGUuAGgugUGCuGCUACCGAg -3'
miRNA:   3'- cacUGUGGCAuUUa--AUGcCGGUGGCU- -5'
11395 3' -50.2 NC_003084.1 + 43042 0.67 0.981988
Target:  5'- gGUGGaa-CGgcuuUUGCGGUCACCGAg -3'
miRNA:   3'- -CACUgugGCauuuAAUGCCGGUGGCU- -5'
11395 3' -50.2 NC_003084.1 + 83617 0.67 0.979753
Target:  5'- uGUGGCuaaaCGUGAGcUUAgcCGcGCCACCGAg -3'
miRNA:   3'- -CACUGug--GCAUUU-AAU--GC-CGGUGGCU- -5'
11395 3' -50.2 NC_003084.1 + 9434 0.67 0.979753
Target:  5'- aGUGGCG-CGUGAuUUugGGCgGCCu- -3'
miRNA:   3'- -CACUGUgGCAUUuAAugCCGgUGGcu -5'
11395 3' -50.2 NC_003084.1 + 67773 0.67 0.977318
Target:  5'- gGUGA-ACCGUccgcgUugGGCCACCu- -3'
miRNA:   3'- -CACUgUGGCAuuua-AugCCGGUGGcu -5'
11395 3' -50.2 NC_003084.1 + 30345 0.67 0.977318
Target:  5'- -gGGCGaagGUGAGUUGCGGuCCGCCcGAg -3'
miRNA:   3'- caCUGUgg-CAUUUAAUGCC-GGUGG-CU- -5'
11395 3' -50.2 NC_003084.1 + 15939 0.67 0.971812
Target:  5'- -gGACAUCuaucaggGAAUUACGGCCcaacuagcacACCGAa -3'
miRNA:   3'- caCUGUGGca-----UUUAAUGCCGG----------UGGCU- -5'
11395 3' -50.2 NC_003084.1 + 17940 0.68 0.968725
Target:  5'- uUGACACCGUAcuacgcaACGGUCGCgGu -3'
miRNA:   3'- cACUGUGGCAUuuaa---UGCCGGUGgCu -5'
11395 3' -50.2 NC_003084.1 + 73885 0.68 0.965404
Target:  5'- gGUGcC-CCGUGAgGUUACGGCgCACCu- -3'
miRNA:   3'- -CACuGuGGCAUU-UAAUGCCG-GUGGcu -5'
11395 3' -50.2 NC_003084.1 + 104327 0.68 0.953976
Target:  5'- -aGGCuCCGUAcAggAUGGCgGCCGAg -3'
miRNA:   3'- caCUGuGGCAUuUaaUGCCGgUGGCU- -5'
11395 3' -50.2 NC_003084.1 + 6901 0.69 0.948765
Target:  5'- -gGACugCGccaacugGCGGCCACCa- -3'
miRNA:   3'- caCUGugGCauuuaa-UGCCGGUGGcu -5'
11395 3' -50.2 NC_003084.1 + 83153 0.69 0.945081
Target:  5'- -gGugGCCGUAAuUUACGGUguCACCc- -3'
miRNA:   3'- caCugUGGCAUUuAAUGCCG--GUGGcu -5'
11395 3' -50.2 NC_003084.1 + 98497 0.69 0.935128
Target:  5'- ---uCACCGUucauuuacGUUAUGGCCACCGu -3'
miRNA:   3'- cacuGUGGCAuu------UAAUGCCGGUGGCu -5'
11395 3' -50.2 NC_003084.1 + 54922 0.7 0.924101
Target:  5'- uGUGAUGCgaaGUGGAguggACGGCCgACCGGu -3'
miRNA:   3'- -CACUGUGg--CAUUUaa--UGCCGG-UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.