miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11395 5' -55.3 NC_003084.1 + 99829 0.66 0.902838
Target:  5'- uGUUUGCCG-CCaagcgGACguguuggCCGAGCCGUc -3'
miRNA:   3'- -CGAGCGGCaGGca---UUGa------GGUUCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 17684 0.66 0.896302
Target:  5'- cGCUCGCCGUCUGcuuCUcauuaccaCCGA-CCGUc -3'
miRNA:   3'- -CGAGCGGCAGGCauuGA--------GGUUcGGCG- -5'
11395 5' -55.3 NC_003084.1 + 50388 0.66 0.889527
Target:  5'- -aUCGCCGUCuuCGUccAGCUcaaCCAAGCgGUc -3'
miRNA:   3'- cgAGCGGCAG--GCA--UUGA---GGUUCGgCG- -5'
11395 5' -55.3 NC_003084.1 + 95475 0.66 0.882517
Target:  5'- ---gGCCGUCCaGUGguGCUCCGuGCgCGUg -3'
miRNA:   3'- cgagCGGCAGG-CAU--UGAGGUuCG-GCG- -5'
11395 5' -55.3 NC_003084.1 + 68217 0.66 0.875277
Target:  5'- uGCUCaCUGUCCaccAGCguaUCCAAGCUGUa -3'
miRNA:   3'- -CGAGcGGCAGGca-UUG---AGGUUCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 40395 0.66 0.875277
Target:  5'- uGCUCGaCuCGUCC---ACUCU-AGCCGUg -3'
miRNA:   3'- -CGAGC-G-GCAGGcauUGAGGuUCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 5636 0.66 0.867811
Target:  5'- aGCUCGuuGUgCGUAuuACcCCAAugugucauGCCGUa -3'
miRNA:   3'- -CGAGCggCAgGCAU--UGaGGUU--------CGGCG- -5'
11395 5' -55.3 NC_003084.1 + 46649 0.66 0.867811
Target:  5'- uGCUCGuaucaCCGUCC--AACUUCAGguGCUGCg -3'
miRNA:   3'- -CGAGC-----GGCAGGcaUUGAGGUU--CGGCG- -5'
11395 5' -55.3 NC_003084.1 + 67456 0.67 0.852227
Target:  5'- -gUCGCgaGUaCGUGgccaGCUCCAGGUCGCc -3'
miRNA:   3'- cgAGCGg-CAgGCAU----UGAGGUUCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 46184 0.67 0.851426
Target:  5'- gGCUUGaCCGuaUCCGacguggaaaauuuUGACUaCCAucAGCCGCu -3'
miRNA:   3'- -CGAGC-GGC--AGGC-------------AUUGA-GGU--UCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 87342 0.67 0.827321
Target:  5'- cCUCGgCGguaCGUAcACUCCGGGCCa- -3'
miRNA:   3'- cGAGCgGCag-GCAU-UGAGGUUCGGcg -5'
11395 5' -55.3 NC_003084.1 + 27677 0.67 0.817762
Target:  5'- aGC-CGCCGggugCCGaUGauguagcGCUCaGAGCCGCu -3'
miRNA:   3'- -CGaGCGGCa---GGC-AU-------UGAGgUUCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 86886 0.68 0.809784
Target:  5'- cGUUCGCUGgCCGUGGCUacgagggagaaCCuugagguuGAGCUGCa -3'
miRNA:   3'- -CGAGCGGCaGGCAUUGA-----------GG--------UUCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 66098 0.68 0.809784
Target:  5'- gGUUCGUCGUCCuca--UCgaAAGCCGCa -3'
miRNA:   3'- -CGAGCGGCAGGcauugAGg-UUCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 55324 0.68 0.809784
Target:  5'- aGC-CGCCGcagCCccaggaUGACUCgGAGCUGCa -3'
miRNA:   3'- -CGaGCGGCa--GGc-----AUUGAGgUUCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 8384 0.68 0.809784
Target:  5'- cCUCGUCGUCCaGUGGgU---AGCCGCg -3'
miRNA:   3'- cGAGCGGCAGG-CAUUgAgguUCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 72142 0.69 0.763178
Target:  5'- -gUCGUCG-CCGUAGCguaCCGAaccaccGCCGCu -3'
miRNA:   3'- cgAGCGGCaGGCAUUGa--GGUU------CGGCG- -5'
11395 5' -55.3 NC_003084.1 + 85385 0.69 0.723669
Target:  5'- aCUCGCUGUCCGagauggGGCUgCCGAGCa-- -3'
miRNA:   3'- cGAGCGGCAGGCa-----UUGA-GGUUCGgcg -5'
11395 5' -55.3 NC_003084.1 + 19011 0.7 0.693146
Target:  5'- cGCUCGUCGUCUGga--UCguugcAGCCGCa -3'
miRNA:   3'- -CGAGCGGCAGGCauugAGgu---UCGGCG- -5'
11395 5' -55.3 NC_003084.1 + 106926 0.7 0.662148
Target:  5'- uGCUCGUCcagGUCCuccuuCUCCAGGUCGUa -3'
miRNA:   3'- -CGAGCGG---CAGGcauu-GAGGUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.