miRNA display CGI

Results 1 - 5 of 5 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
11396	5'	-53.4	NC_003084.1	+	53409	0.66	0.931614
	Target:  5'- --gGCCgCCGGAcaagcGCCaaUCUCCUCCAa -3' miRNA:   3'- uagUGG-GGCUUu----UGGcaAGAGGAGGU- -5'
11396	5'	-53.4	NC_003084.1	+	99859	0.67	0.908167
	Target:  5'- uUCGCCCgGGAAAac---CUCCUCCAa -3' miRNA:   3'- uAGUGGGgCUUUUggcaaGAGGAGGU- -5'
11396	5'	-53.4	NC_003084.1	+	84111	0.67	0.901656
	Target:  5'- uGUCACCCUuu-AGCuucuCGaUCUCCUCCAa -3' miRNA:   3'- -UAGUGGGGcuuUUG----GCaAGAGGAGGU- -5'
11396	5'	-53.4	NC_003084.1	+	47278	0.7	0.746788
	Target:  5'- uUUugCCCGGucGgCGUaCUCCUCCAg -3' miRNA:   3'- uAGugGGGCUuuUgGCAaGAGGAGGU- -5'
11396	5'	-53.4	NC_003084.1	+	85960	1.07	0.004434
	Target:  5'- cAUCACCCCGAAAACCGUUCUCCUCCAg -3' miRNA:   3'- -UAGUGGGGCUUUUGGCAAGAGGAGGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home