miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11397 3' -53.7 NC_003084.1 + 101246 0.66 0.948884
Target:  5'- uGUCGCuac-UGGuGGCCaGUuCGUGGGg -3'
miRNA:   3'- gCGGCGuuuuACC-CUGG-CAuGCACCC- -5'
11397 3' -53.7 NC_003084.1 + 81966 0.66 0.944429
Target:  5'- cCGuaGCGAccaaacccGGUGacGGACCGUcCGUGGGc -3'
miRNA:   3'- -GCggCGUU--------UUAC--CCUGGCAuGCACCC- -5'
11397 3' -53.7 NC_003084.1 + 94374 0.66 0.944429
Target:  5'- gCGCUGCuu-GUGGGGCCaacUGCGcacccGGGc -3'
miRNA:   3'- -GCGGCGuuuUACCCUGGc--AUGCa----CCC- -5'
11397 3' -53.7 NC_003084.1 + 2148 0.67 0.924125
Target:  5'- aGCUGCAAGAUGgucGGACCGUuuGUa-- -3'
miRNA:   3'- gCGGCGUUUUAC---CCUGGCAugCAccc -5'
11397 3' -53.7 NC_003084.1 + 47887 0.67 0.912469
Target:  5'- aGCCGCAAcuuugcacuuGGUGGcGcgaguuaacguaACCG-GCGUGGGu -3'
miRNA:   3'- gCGGCGUU----------UUACC-C------------UGGCaUGCACCC- -5'
11397 3' -53.7 NC_003084.1 + 53591 0.67 0.905634
Target:  5'- gCGCUGaagguGUGGGAuuucaacCCGggccGCGUGGGg -3'
miRNA:   3'- -GCGGCguuu-UACCCU-------GGCa---UGCACCC- -5'
11397 3' -53.7 NC_003084.1 + 45969 0.67 0.89982
Target:  5'- aGCCGCAGAA--GGAgCGUAuuguCGUGGu -3'
miRNA:   3'- gCGGCGUUUUacCCUgGCAU----GCACCc -5'
11397 3' -53.7 NC_003084.1 + 99378 0.68 0.871632
Target:  5'- gGCCGCAucaccAAGUGGGGCUcguaaaGUugGUccccauuucGGGa -3'
miRNA:   3'- gCGGCGU-----UUUACCCUGG------CAugCA---------CCC- -5'
11397 3' -53.7 NC_003084.1 + 61929 0.69 0.848111
Target:  5'- cCGCCGCAGAcUGaGGAuaaaCCGUAcggugcucCGUGGa -3'
miRNA:   3'- -GCGGCGUUUuAC-CCU----GGCAU--------GCACCc -5'
11397 3' -53.7 NC_003084.1 + 65454 0.7 0.804904
Target:  5'- aGgCGCAuuAUGGGACCaccguugguGUGCcgaGUGGGc -3'
miRNA:   3'- gCgGCGUuuUACCCUGG---------CAUG---CACCC- -5'
11397 3' -53.7 NC_003084.1 + 96724 0.7 0.757603
Target:  5'- uGCCGCGGuuGUGGGugCGgu--UGGGg -3'
miRNA:   3'- gCGGCGUUu-UACCCugGCaugcACCC- -5'
11397 3' -53.7 NC_003084.1 + 79724 0.7 0.757603
Target:  5'- gCGCCGCAAAAaGGGAuCCGaagcugAgGUGGu -3'
miRNA:   3'- -GCGGCGUUUUaCCCU-GGCa-----UgCACCc -5'
11397 3' -53.7 NC_003084.1 + 88582 1.11 0.002998
Target:  5'- aCGCCGCAAAAUGGGACCGUACGUGGGc -3'
miRNA:   3'- -GCGGCGUUUUACCCUGGCAUGCACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.