miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11398 5' -51.3 NC_003084.1 + 32349 0.66 0.969957
Target:  5'- ----cGCCGCGUU-CGCUgGAUCAa- -3'
miRNA:   3'- uuucaUGGCGCAAuGCGAgCUGGUag -5'
11398 5' -51.3 NC_003084.1 + 14869 0.66 0.969957
Target:  5'- -cGGUGCCGCGagGCGUgcuugauuucCGACCGa- -3'
miRNA:   3'- uuUCAUGGCGCaaUGCGa---------GCUGGUag -5'
11398 5' -51.3 NC_003084.1 + 21420 0.66 0.96288
Target:  5'- -uAGUGCCGCGUaaaguuaUACGCgacggGGCCGa- -3'
miRNA:   3'- uuUCAUGGCGCA-------AUGCGag---CUGGUag -5'
11398 5' -51.3 NC_003084.1 + 94879 0.67 0.955543
Target:  5'- cGAGGUaaAUCGCGUUAacaaaCUCGACCAa- -3'
miRNA:   3'- -UUUCA--UGGCGCAAUgc---GAGCUGGUag -5'
11398 5' -51.3 NC_003084.1 + 28864 0.67 0.955543
Target:  5'- aGGAGaACCGUGgccgucCGCUCGACCu-- -3'
miRNA:   3'- -UUUCaUGGCGCaau---GCGAGCUGGuag -5'
11398 5' -51.3 NC_003084.1 + 44720 0.67 0.955543
Target:  5'- cGAGUACCGCGUUAUGauCUUGGaaAUUg -3'
miRNA:   3'- uUUCAUGGCGCAAUGC--GAGCUggUAG- -5'
11398 5' -51.3 NC_003084.1 + 27122 0.69 0.887115
Target:  5'- ----aGCCGacUUGCGCUCGcACCAUCg -3'
miRNA:   3'- uuucaUGGCgcAAUGCGAGC-UGGUAG- -5'
11398 5' -51.3 NC_003084.1 + 19494 0.69 0.886383
Target:  5'- --uGUACCGCGgaUACGacgaacaagcgucCUCGGCCGUUa -3'
miRNA:   3'- uuuCAUGGCGCa-AUGC-------------GAGCUGGUAG- -5'
11398 5' -51.3 NC_003084.1 + 87533 0.7 0.847547
Target:  5'- aAAAGUACCGCaaaguCGCUCGcCCAg- -3'
miRNA:   3'- -UUUCAUGGCGcaau-GCGAGCuGGUag -5'
11398 5' -51.3 NC_003084.1 + 75379 0.71 0.78313
Target:  5'- --cGUGCCGCGcgcACGCUCcgccuGGCCAUUa -3'
miRNA:   3'- uuuCAUGGCGCaa-UGCGAG-----CUGGUAG- -5'
11398 5' -51.3 NC_003084.1 + 97234 0.72 0.763185
Target:  5'- -uGGUAUCGCuaaaccUGCUCGGCCAUCa -3'
miRNA:   3'- uuUCAUGGCGcaau--GCGAGCUGGUAG- -5'
11398 5' -51.3 NC_003084.1 + 102640 0.72 0.732306
Target:  5'- cGGAGUACCGCGUgaauuCGCUC-AUCAUg -3'
miRNA:   3'- -UUUCAUGGCGCAau---GCGAGcUGGUAg -5'
11398 5' -51.3 NC_003084.1 + 105304 0.74 0.634441
Target:  5'- gAAAGuUGCUGCGcucuagcUUGCGCUCGACC-UCa -3'
miRNA:   3'- -UUUC-AUGGCGC-------AAUGCGAGCUGGuAG- -5'
11398 5' -51.3 NC_003084.1 + 93740 1.07 0.006329
Target:  5'- aAAAGUACCGCGUUACGCUCGACCAUCu -3'
miRNA:   3'- -UUUCAUGGCGCAAUGCGAGCUGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.