Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 96443 | 1.1 | 0.002949 |
Target: 5'- cGCCGCCACCACCAUCGGUACCAUUUGc -3' miRNA: 3'- -CGGCGGUGGUGGUAGCCAUGGUAAAC- -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 62051 | 0.77 | 0.380712 |
Target: 5'- cGCCGCCACCACCAccgUUGcUACCAc--- -3' miRNA: 3'- -CGGCGGUGGUGGU---AGCcAUGGUaaac -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 5807 | 0.75 | 0.502341 |
Target: 5'- uGCCGCU-CCAUCAUgCGGUcCCAUUUGu -3' miRNA: 3'- -CGGCGGuGGUGGUA-GCCAuGGUAAAC- -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 30559 | 0.73 | 0.606167 |
Target: 5'- gGgCGCUGCCGCCAUCGG--CCAUUg- -3' miRNA: 3'- -CgGCGGUGGUGGUAGCCauGGUAAac -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 100987 | 0.72 | 0.680463 |
Target: 5'- cGCCGCCACCACCAcagcCGaaGCCGc--- -3' miRNA: 3'- -CGGCGGUGGUGGUa---GCcaUGGUaaac -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 17680 | 0.7 | 0.78872 |
Target: 5'- cGCCGucugcuucucauuaCCACCgACCGUCGGUGCaCGa--- -3' miRNA: 3'- -CGGC--------------GGUGG-UGGUAGCCAUG-GUaaac -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 43480 | 0.69 | 0.800934 |
Target: 5'- aCCGCCGCCACCAaguGUACCc---- -3' miRNA: 3'- cGGCGGUGGUGGUagcCAUGGuaaac -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 25466 | 0.69 | 0.828023 |
Target: 5'- cCCGCCACCgugucgggcAUCGUCGGUaggGCCGa--- -3' miRNA: 3'- cGGCGGUGG---------UGGUAGCCA---UGGUaaac -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 6567 | 0.68 | 0.869218 |
Target: 5'- cGCCGCCACgACCcacggcucGUUGGUgAUCGggUGg -3' miRNA: 3'- -CGGCGGUGgUGG--------UAGCCA-UGGUaaAC- -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 49587 | 0.67 | 0.884136 |
Target: 5'- aGCuCGgCACCACCcgcucgUGGUACgAUUUGu -3' miRNA: 3'- -CG-GCgGUGGUGGua----GCCAUGgUAAAC- -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 48470 | 0.66 | 0.922979 |
Target: 5'- cGCCcUCACgUACCGUCGGUAgCGUg-- -3' miRNA: 3'- -CGGcGGUG-GUGGUAGCCAUgGUAaac -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 27625 | 0.66 | 0.933881 |
Target: 5'- -gCGuCCAacuCCACCAaCGGUGCCAa--- -3' miRNA: 3'- cgGC-GGU---GGUGGUaGCCAUGGUaaac -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 21208 | 0.66 | 0.933881 |
Target: 5'- uGUCGUCugCACUuUCGGUGCgCAc--- -3' miRNA: 3'- -CGGCGGugGUGGuAGCCAUG-GUaaac -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 91093 | 0.66 | 0.933881 |
Target: 5'- gGgCGCCaggGCCACaCGUUGGUGuCCGUgcUUGg -3' miRNA: 3'- -CgGCGG---UGGUG-GUAGCCAU-GGUA--AAC- -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 61152 | 0.66 | 0.943754 |
Target: 5'- -aCGCCACCGC--UCGGUGcacCCAacUUUGa -3' miRNA: 3'- cgGCGGUGGUGguAGCCAU---GGU--AAAC- -5' |
|||||||
11399 | 3' | -53.4 | NC_003084.1 | + | 20995 | 0.66 | 0.943754 |
Target: 5'- aUCGaguaCACCAUCGUCaaGGUGCCGUa-- -3' miRNA: 3'- cGGCg---GUGGUGGUAG--CCAUGGUAaac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home