miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11400 3' -56 NC_003084.1 + 25018 0.66 0.858809
Target:  5'- uCCCGUUAgGGGCGUGCACGaccuGGCgUGCUc -3'
miRNA:   3'- -GGGUAGU-UCUGCGUGUGCg---UCG-GCGA- -5'
11400 3' -56 NC_003084.1 + 13013 0.66 0.850835
Target:  5'- gCCAUagccaGCGCACccuGCGUAGCUGCa -3'
miRNA:   3'- gGGUAguuc-UGCGUG---UGCGUCGGCGa -5'
11400 3' -56 NC_003084.1 + 63449 0.66 0.850835
Target:  5'- cCCCAUgGAGAUGgACucuauGCGCGGUgGUg -3'
miRNA:   3'- -GGGUAgUUCUGCgUG-----UGCGUCGgCGa -5'
11400 3' -56 NC_003084.1 + 41245 0.66 0.850835
Target:  5'- gCgAUaCAAGuCGCGCACGaauuuaguUAGCCGCUu -3'
miRNA:   3'- gGgUA-GUUCuGCGUGUGC--------GUCGGCGA- -5'
11400 3' -56 NC_003084.1 + 72118 0.66 0.842654
Target:  5'- aCCAUCGAGcCGUACAuuguguuuguCGUcGCCGUa -3'
miRNA:   3'- gGGUAGUUCuGCGUGU----------GCGuCGGCGa -5'
11400 3' -56 NC_003084.1 + 57556 0.66 0.834273
Target:  5'- aCUGUCAAcAUGaACAUGCAGCUGCg -3'
miRNA:   3'- gGGUAGUUcUGCgUGUGCGUCGGCGa -5'
11400 3' -56 NC_003084.1 + 103757 0.66 0.834273
Target:  5'- aCCAUUu---CGUACACGCAGguCCGCc -3'
miRNA:   3'- gGGUAGuucuGCGUGUGCGUC--GGCGa -5'
11400 3' -56 NC_003084.1 + 18224 0.66 0.825698
Target:  5'- aCCCGUCAcccaACGC-CAC-CGGCUGCa -3'
miRNA:   3'- -GGGUAGUuc--UGCGuGUGcGUCGGCGa -5'
11400 3' -56 NC_003084.1 + 78217 0.67 0.808006
Target:  5'- aCCGUCGAGcuccacCGCgaaACGCAGUCGUg -3'
miRNA:   3'- gGGUAGUUCu-----GCGug-UGCGUCGGCGa -5'
11400 3' -56 NC_003084.1 + 97176 0.67 0.808006
Target:  5'- gCUCGUU--GACGCACuguuCGCGGuuGCa -3'
miRNA:   3'- -GGGUAGuuCUGCGUGu---GCGUCggCGa -5'
11400 3' -56 NC_003084.1 + 102820 0.67 0.789647
Target:  5'- aCCCAUUGAGGCGguucgcCACACGCacugGGCCu-- -3'
miRNA:   3'- -GGGUAGUUCUGC------GUGUGCG----UCGGcga -5'
11400 3' -56 NC_003084.1 + 74532 0.68 0.741318
Target:  5'- cCCCAUCGAGuccCGCGaucugaacaaguCGCuGCAGCUGUa -3'
miRNA:   3'- -GGGUAGUUCu--GCGU------------GUG-CGUCGGCGa -5'
11400 3' -56 NC_003084.1 + 104175 0.69 0.700801
Target:  5'- aCCGUCAucgcGAUGCugACcuCGGCCGCc -3'
miRNA:   3'- gGGUAGUu---CUGCGugUGc-GUCGGCGa -5'
11400 3' -56 NC_003084.1 + 80894 0.69 0.699773
Target:  5'- -aCAUCGAGAUGCugcucaaGCACGUugGGCgCGCUg -3'
miRNA:   3'- ggGUAGUUCUGCG-------UGUGCG--UCG-GCGA- -5'
11400 3' -56 NC_003084.1 + 31185 0.7 0.648861
Target:  5'- cUCCucCGAGGCGCACuCG-AGCCGCUc -3'
miRNA:   3'- -GGGuaGUUCUGCGUGuGCgUCGGCGA- -5'
11400 3' -56 NC_003084.1 + 100353 0.71 0.544936
Target:  5'- -gCGUUAGGGCGCugGaGCGGCUGCg -3'
miRNA:   3'- ggGUAGUUCUGCGugUgCGUCGGCGa -5'
11400 3' -56 NC_003084.1 + 105939 0.72 0.524671
Target:  5'- uCCCAUCcaucuCGCACuguUGCAGCCGUa -3'
miRNA:   3'- -GGGUAGuucu-GCGUGu--GCGUCGGCGa -5'
11400 3' -56 NC_003084.1 + 18591 0.72 0.504699
Target:  5'- cUCCggCAAaACGUGCGCGUAGCCGUa -3'
miRNA:   3'- -GGGuaGUUcUGCGUGUGCGUCGGCGa -5'
11400 3' -56 NC_003084.1 + 104513 0.73 0.437668
Target:  5'- gCCCAgu-GGAgCGCAaucuCACGCAGCCGUa -3'
miRNA:   3'- -GGGUaguUCU-GCGU----GUGCGUCGGCGa -5'
11400 3' -56 NC_003084.1 + 96473 0.75 0.335749
Target:  5'- cCCCGUCccaacCGguCGCGCAGCCGCa -3'
miRNA:   3'- -GGGUAGuucu-GCguGUGCGUCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.